Opisthocomus hoazin (hoatzin): 104335322
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Entry
104335322 CDS
T08436
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03015
mRNA surveillance pathway
oha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104335322 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
104335322 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oha03019
]
104335322 (PABPC4)
03041 Spliceosome [BR:
oha03041
]
104335322 (PABPC4)
Messenger RNA biogenesis [BR:
oha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104335322 (PABPC4)
mRNA cycle factors
Stress granule specific factors
104335322 (PABPC4)
Spliceosome [BR:
oha03041
]
Complex C
Other components
Complex C specific factors
104335322 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
NOP5NT
Motif
Other DBs
NCBI-GeneID:
104335322
NCBI-ProteinID:
XP_009939349
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPAGKSKGFGFVSFEK
HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPAGNAPASRGLPAA
AQRVGIGAAAQNLAPRPPVAAPAPRAVSPYKYASSVRSPHPAVQPLQAAQPAVHVQGQEP
LTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLR
SKVEEAVAVLQAHQAKKEAAQKVGGVVAATS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcggctgccagcagttacccgatggcgtcgctgtacgtgggggacctgcacccc
gatgtcaccgaggccatgctctacgagaagttcagccccgctgggcccgttctatcgatt
cgggtctgcagggatatgatcacccgccggtccctcgggtatgcctatgtcaacttccag
cagccagcggatgctgagcgtgctctagataccatgaattttgatgtgatcaaaggaaaa
cccattcgcatcatgtggtctcagagggacccctccttgaggaagtcaggggttgggaat
gtcttcattaagaacctggacaaatccattgataacaaggcactttatgacacattctca
gcgtttgggaatattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcatttgtgcactttgagacccaggatgctgcagatagagccatcgagaagatgaacggc
atgctgctgaacgaccgcaaagtatttgttgggagattcaagtctcgtaaagagcgggag
gctgagttgggagccaaggcaaaggaattcaccaatgtttatattaaaaactttggggat
gacatggatgatgaaagactaaaggagctcttcagcaaatatggtaaaactctcagtgtt
aaagtgatgacagaccccgctggaaaatccaaaggctttggctttgtaagctttgaaaag
catgaagatgctaacaaggcagtagaagaaatgaacggaaaggatatcaatgggaaaatg
gtatttgtaggccgagcacagaagaaggttgagcgccaggcagagctgaaacggaagttt
gaacagctaaaacaagagagactcagccggtaccagggtgttaacttgtacattaaaaac
ctagatgacactatagatgatgaaaaactgaggaaggagttctcaccttttgggtcgata
acgagcgccaaggtgatgctggaagatggacggagcaaagggtttggctttgtctgcttt
tcctctccagaggaagctacgaaagctgtgacagagatgaatgggcgaattgtgggctct
aagccactgtatgttgcacttgcgcaaaggaaagaagagcgaaaggcccatctaactaat
cagtacatgcagcgcattgctgggatgagagccttgcctgccaacaccatcattaatcag
ttccagcctgctgctgggggatatttcatgcctgctgtgccccaggctcagagcagaccc
acttactatgcaccaaatcagatgacgcagatgagacccaacccacgctggcagcaaggg
ggaaggcctcaaggcttccagggaatgcccaatgccatgcgccagtctggaccacggcca
gcactgcgccatctggcccctgccggcaatgctccggcctctcgtggcctccctgccgct
gcccagcgggttggcatcggcgctgcagcgcagaacttagctcctcgtccgcctgtagct
gcccctgctcccagagcggtttctccttacaaatacgcctccagtgtccgcagcccccac
ccagccgtacagcctttgcaggcagctcagcctgcagtacatgtgcagggacaggaaccg
ctaacggcctccatgctggctgctgcccctccccaggagcagaaacagatgctgggagaa
cgcttgttccctctgattcaagctatgcacccaagccttgctgggaagatcacaggaatg
ctgctagagattgacaactcggagctcctgcacatgctagagtctccggagtccctccgg
tcaaaggtggaggaggccgttgctgtgttgcaggctcaccaggccaagaaggaagctgcc
cagaaggtgggcggcgtggttgctgctacctcttaa
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