Opisthocomus hoazin (hoatzin): 104335376
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Entry
104335376 CDS
T08436
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104335376 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oha03041
]
104335376 (PRPF4)
Spliceosome [BR:
oha03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104335376 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
PRP4
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_2nd
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_IFT140_1st
WD40_like
WD_LRWD1
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
104335376
NCBI-ProteinID:
XP_009939407
LinkDB
All DBs
Position
Unknown
AA seq
464 aa
AA seq
DB search
LQATKSKPAEESDAPATKRAPIFYGSLEEKERERLAKGESGLLGREGMKAALEAGNINIS
SGEVFDLEDHMSERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE
RRERLRNILSVVGTDALKKTRKDDDRSKKSREEYQQTWYHEGPRSLKTARLWLFFFFLPR
AAKRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFCSQIGDDRPLSYCHFSPNSKLLAT
ACWSGLCKLWSVPDCNLVHTLRGHNTNVGAIVFHPKATISLDKKDVNLASCAADGSVKLW
SLESDEPVADIEGHNMRVARVMWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSKGV
YDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGVNFSPNGYHVATGSGD
NTCKVWDLRQRKCIYTIPAHQNLVTGVKFEPHHGNFLSVEASPV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggccacaaagagcaagcccgccgaagagagcgatgcgcccgcgaccaagagagcc
cccatcttctatggcagcttggaggagaaggagagggagcgtctggcgaaaggcgaatcg
gggctgctgggaagggaggggatgaaggctgcgctcgaggccggcaacatcaacatcagc
agcggtgaggtctttgacctcgaagaccacatgagcgagcggcaggcggaggtgctggct
gagtttgagcgcaggaagcgagcccggcagatcaacgtctccactgacgactctgaagtg
aaagcctgcttgcgagcgctgggggagcccatcacgctctttggagagggtcctgcagaa
aggagggagaggctaagaaatatcctttcggtggttggcacagatgcattaaaaaagacc
aggaaagatgacgacaggtctaaaaaatccagagaagagtatcagcaaacctggtaccac
gaaggaccacgcagtctgaaaacagcgaggctgtggcttttttttttttttctccccagg
gcagcgaagcggctggaagaagcacggctgctcaaagagattccggaggcaaccaggacg
tcgcagagacaggagctacacaaatccctgcgatccttaaataacttctgcagtcagatc
ggagacgatcgcccgctgtcctactgccacttcagccccaattccaagctcctcgctacg
gcctgttggagcgggttgtgcaagctctggtccgtgcctgactgcaaccttgttcacacc
ttacgaggacataacaccaacgtgggagcaatagtcttccatcccaaagccaccatctcc
ctagacaagaaggatgttaacctggcctcgtgtgcggctgatgggtctgtcaaactctgg
agccttgaaagtgatgaaccggtggcagatatcgaaggacacaacatgagagtggcacgt
gtgatgtggcacccgtctgggaggttcctgggtactacctgctacgatcactcgtggcgc
ctgtgggacttggaagctcaggaggagattctccatcaggaggggcacagcaaaggggtc
tatgacatcgcctttcacacggatggctctctggctgggacgggtggactggatgctttt
ggccgggtgtgggacttgcgcacgggacgctgcatcatgtttctagaaggccacctgaag
gagatctacggcgttaacttctccccaaatggataccacgttgcaactggcagcggtgac
aacacttgcaaggtgtgggacctgcggcaaaggaagtgcatctacaccattcctgcccat
cagaacctggtgacgggcgtgaaatttgaaccccatcacggcaacttcctatccgtggag
gcatctcctgtttaa
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