KEGG   Opisthocomus hoazin (hoatzin): 104335919
Entry
104335919         CDS       T08436                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
oha  Opisthocomus hoazin (hoatzin)
Pathway
oha03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oha00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104335919 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oha03041]
    104335919 (SNRNP40)
Spliceosome [BR:oha03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104335919 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    104335919 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_HPS5 WDR54 PROPPIN WD40_like Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 104335919
NCBI-ProteinID: XP_009940005
LinkDB
Position
Unknown
AA seq 320 aa
LTRLCHCLPQGPPRCSSLQAPIMLLSGHEGEVYCCKFHPSGSTLASAGFDRLILLWNVYG
DCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSC
YPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDI
KVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKIF
QGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAGSVNELAFHP
EEPITLSASSDKRLYMGEIQ
NT seq 963 nt   +upstreamnt  +downstreamnt
ctcacccggctctgccattgcctcccgcagggcccaccacgctgctcctcgctgcaggcc
cccatcatgctgctctcggggcacgagggagaggtgtactgctgcaagttccaccctagc
ggcagcaccctcgcctccgccggcttcgacaggctcatcctgctgtggaacgtctacggg
gactgcgataactacgccaccctgaagggacacagcggggcagttatggagctgcactat
aacacagatggcagcatgcttttctcagcatccacagacaaaaccgtggccgtgtgggac
agcgagacgggagagagagtgaagagactgaagggccatacctcgttcgttaactcctgt
tacccagcgaggcgagggccccagctcgtctgcacaggcagcgatgacgggacggtgaag
ctgtgggatatcaggaaaaaagcggccgtccagacatttcagaacacgtaccaggtcttg
gctgtaactttcaatgacaccagtgatcagatcatctctggaggcatcgacaacgatatt
aaggtgtgggaccttcgccagaacaagctcacgtacaccatgagagggcacgcggactcg
gtgacaggcctcagcctgagctcggaaggctcctacctgctctccaacgccatggacaac
acggttcgcatctgggatgtgcgaccatttgcccctaaagagagatgtgtaaagattttc
caggggaatgtgcataattttgaaaagaatcttctgaggtgctcttggtccccagacggg
agtaaaatcgcagggggatcggctgaccggtttgtctacgtgtgggacaccacatccagg
aggattttgtacaagctgccaggccacgctgggtcggtgaacgagctggctttccatcca
gaggaacccattacactctccgcatccagcgacaaaaggctgtacatgggggagatccag
tga

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