Opisthocomus hoazin (hoatzin): 104337626
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Entry
104337626 CDS
T08436
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03013
Nucleocytoplasmic transport
oha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104337626 (UPF2)
03015 mRNA surveillance pathway
104337626 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oha03019
]
104337626 (UPF2)
Messenger RNA biogenesis [BR:
oha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104337626 (UPF2)
mRNA cycle factors
P-body specific factors
104337626 (UPF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
104337626
NCBI-ProteinID:
XP_009941892
LinkDB
All DBs
Position
Unknown
AA seq
1271 aa
AA seq
DB search
MPAERKKSANMEEKESLLNNKEKEFGERRPVSTREKPKEDVKVGMKREALKVPEDKKKKL
EEDKRKKEDKERKKKEDDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFVLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSSKDESRDSKDAKDSKEAPGSEDLELELENLDINDDALELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAIRQVQDLEREFLIKLGIVNDKDSKD
SITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagtcagcaaatatggaagaaaaagaatctctattaaataat
aaagaaaaagaatttggtgaaaggcggccagtgagcacccgggagaagccaaaagaagat
gtcaaggttggcatgaagagagaggctttaaaggttcctgaagataaaaagaaaaaactg
gaagaggataaaagaaaaaaggaagacaaggagcggaagaaaaaagaagatgataaagta
aaggcagaagaagagcaaaagaagaaagaagaagaagaaaaaaagaaacttgaagaagag
gagaaaaagaagcaagaggaggaagagaagaagaaacaagaagaagcagctgctcagctg
aaagaaaaagaggaagcacatcagctccatcaggaggcttgggagcgccatcaggcaaga
aaagagcttcgcagcaaaaaccagaatgcaccagacaatcgccctgaggaaaacttcttc
agcagactagattccagtttgaagaagaacacggcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccatgactttaatagtctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaagccaaactaaaaatatcagatgtgaactgc
gctgtgcacttgtgttccctctttcaccagcgctatgctgattttgcgccttcgctactt
caggcttggaaaaaacattttgaagcaaggaaagaagagaaaactcccaacattaccaag
ttaagaactgatttgcgtttcattgctgaattgacgatagttgggattttcactgacaag
gaaggtctgtctttaatctatgagcagcttaaaaatattattaacgctgatcgagaatcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggt
ttggtaccaaggaaagtaaaaactgttgcagagaagtttgtcttgagctttcctcctagt
gagataattagcccagagaaacagcagcccttccagaatctgttgaaggaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
aggcgcatacttcactccaaaggagagctgagtgaagatcgacacaagcaatatgaggag
tttgcaatgtcctatcagaagctgttggcaaattctcaatctctagccgatcttttggat
gaaaatatgcctgaccttccccaagagaagccaacacctgaggagcatggacctggtatt
gatattttcacaccaggaaagcctggagaatatgacctggaggggggtatctgggaagac
gaagacgctagaaacttctatgagaatctcatcgacttaaaggcttttgtgccagcaatt
ttgtttaaagataatgaaaagtgttctcagaacaaggattccagcaaagatgaatcaaga
gattcaaaagatgccaaagatagtaaggaagcacctgggagtgaggatttggagttggag
ctggaaaacctggatattaatgatgatgctctggagttagactgtggagatgaggcagaa
gatcttacaaaaaagcttcttgatgagcaagaacaagaggatgaagaagccagtactgga
tctcatttaaaacttatagtagatgcttttcttcagcagcttccaaattgtgtcaacaga
gacctcatagacaaggcggcaatggatttttgcatgaatatgaatacaaaagccaacaga
agaaaactagtacgagcactcttcatagttcctagacaaaggttggatttgctaccgttt
tatgcaaggctggtggccacattgcatccctgtatgtcggatgtagcggaggatctttgt
tccatgctgaaaggggatttcaggtttcatgtaagaaagaaggaccagatcaacattgaa
acaaagaataaaactgtgaggtttattggtgagcttaccaagtttaagatgttctccaaa
aatgatactctccactgtttaaagatgcttctgtcagacttctctcatcaccatattgaa
atggcatgtactctgctggaaacctgtggaagattcctctttagatcaccagaatctcac
ttaagaaccagtgttcttttggaacaaatgatgagaaaaaaacaagcaatgcatcttgat
gcacgctatgttacaatggtagaaaatgcttattactactgtaatccccctccagctgaa
aaaactgtgaagaaaaaacgtcctcctttgcaggaatatattcgtaagcttctttacaag
gatctctccaaggtcaccacagagaaggtcctgagacagatgcgcaagctgccttggcag
gatgcggaagtaaaagactatgttatatgctgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagcagggttggtcctttaccaggaagatgtc
ggaattcatgttgtggatggagtgctagaggatattcgactaggaatggaggttaaccag
ccaaagtttaaccagcggcggatcagcagtgccaagtttttgggggagctttacaattat
cgaatggtggaatccgctgtaatatttcgaactctctattctttcacttcatttggtgtg
aaccctgatggtagtcctagtccactggaccctccagagcatcttttcagaatcagacta
gtctgtacaatcctcgatacctgtgggcagtattttgacagaggatccagcaaacgaaaa
cttgattgcttccttgtatactttcagcggtatgtttggtggaaaaaaagtctggatgtt
tggacaaaagaccacccatttccgatagacatagactatatgatcagtgatacactggaa
ctgctgagaccaaagataaagctctgcaattctctggaagaagctatcagacaagtgcaa
gacttggaacgagaattcttaataaaattaggaattgtgaatgacaaagattccaaagat
tccattacagaaggagagaatctggaagaggatgaagaggaagaggaaggtggagcagag
acagaggaacaatctggaaatgaaagtgaagtaaatgagccagaagaagaggagggctct
gacaatgaggaagaagaaggtgaagaagaggaggaagaaaacacggattatcttacagat
tctaataaggaaaatgaaaccgatgaggagaatacagaagtaatgattaaaggaggagga
cttaaacatgtcccttgtgcggaagatgaggacttcattcaggcattggataaaatgatg
ctggaaaatcttcagcaacggagtggtgaatctgttaaagtacatcagctggatgtggct
attcctctgcatctcaaaagtcagctcaagaagggtcccccacttggaggcggggaagga
gagtcagagtctggagacacaatgccatttgtcatgttaacacgaaaaggcaacaaacag
cagtttaagatcctaaacgtaccaatgtcttcccaacttgctgcaaaccattggaaccaa
cagcaagctgaacaggaggagagaatgaggatgaaaaagctcactttggatatcaacgaa
cggcaagaacaagaggactaccaggaaatgttgcagtctctggcacagcgtccagctcca
gcaaatactaatcgtgaacggcggcctcgttaccagcatccgaagggagcacctaatgca
gatctaatctttaaaactggtgggaggagacgttga
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integrated database retrieval system
