Opisthocomus hoazin (hoatzin): 104338040
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Entry
104338040 CDS
T08436
Symbol
RTCB
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oha
Opisthocomus hoazin (hoatzin)
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oha03016
]
104338040 (RTCB)
Enzymes [BR:
oha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104338040 (RTCB)
Transfer RNA biogenesis [BR:
oha03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104338040 (RTCB)
Prokaryotic type
tRNA splicing ligases
104338040 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104338040
NCBI-ProteinID:
XP_009942357
LinkDB
All DBs
Position
Unknown
AA seq
453 aa
AA seq
DB search
MSSWLGARGDVGRQRKLMEWLGCAGGFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFA
IGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGV
GSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRG
LPQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALV
AMEKAMKRDKIIVNDRQLACARISSAEGQDSMTFLTRQAFAKVFNTTPDDLDMHVIYDVS
HNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVL
TGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAP
ESYKNVTDVVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcctggttgggggcgaggggcgatgtggggaggcaaagaaagctgatggaatgg
ttaggctgtgcaggtggctttttgcctgctatgaaacagattgggaatgtggctgcgtta
cctggcattgttcatagatcaataggccttccagatgtccattctggatatgggtttgcc
attggcaacatggctgcctttgatatgaatgatcctgaagcagtggtttcaccaggtggt
gtcggatttgacatcaactgtggtgtccgcttacttcgtacaaatttggatgaaagtgat
gtgcagcctgtgaaggagcagctcgcccaggctatgtttgaccacattcctgttggtgtc
ggctccaagggtgttatccccatgaatgccaaggatttggaagaggcactggagatgggt
gtggattggtctctccgggaaggctatgcctgggcagaggacaaggagcactgtgaggaa
tatggaagaatgctgcaggctgaccccaacaaggtctcctcaagagcgaagaagagaggt
ctgcctcagctggggaccctgggagctggaaatcattacgccgagatccaggttgtggac
gacatttacaacgaatacgctgccaggaagatgggcatcgaccacaaagggcaggtctgc
gtgatgatccacagtggcagcagaggcctgggccaccaggttgccacagatgccttggtg
gctatggaaaaagctatgaaacgggacaaaatcatagtgaatgatcgccagctggcgtgt
gccaggatttcctctgcagagggacaggattctatgacttttctaacaagacaggccttt
gccaaagtcttcaacacaaccccagatgaccttgatatgcatgttatctatgatgtgtct
cacaacattgccaaagtggagcaacatgtagtggacggaaaggagcggactctgctcgtg
cacagaaagggatcaaccagggccttcccccctcaccaccctcttatcgctgttgattat
caactgactggacagcctgttttgatcggcgggactatgggcacctgtagctacgttctt
actggcacagagcaaggcatgacggagacctttggaactacttgccatggagccggtcgt
gcactgtctcgagccaaatctcgacgtaacttggacttccaggatgtattggacaagctg
gctgacatgggcattgccatccgtgttgcttctcccaagctggtcatggaagaagcacca
gagtcttataagaacgtgacagatgtcgttaacacctgccacgcagctggcatcagcaag
aaagccattaaactgagacctattgctgttataaaaggctag
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