Opisthocomus hoazin (hoatzin): 104338460
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Entry
104338460 CDS
T08436
Symbol
NCBP1
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03013
Nucleocytoplasmic transport
oha03015
mRNA surveillance pathway
oha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104338460 (NCBP1)
09122 Translation
03013 Nucleocytoplasmic transport
104338460 (NCBP1)
03015 mRNA surveillance pathway
104338460 (NCBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oha03019
]
104338460 (NCBP1)
03041 Spliceosome [BR:
oha03041
]
104338460 (NCBP1)
Messenger RNA biogenesis [BR:
oha03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
104338460 (NCBP1)
Spliceosome [BR:
oha03041
]
Common components
Common spliceosomal components
Cap binding complex
104338460 (NCBP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
Importin_rep_6
C24B10_03
Vfa1
Motif
Other DBs
NCBI-GeneID:
104338460
NCBI-ProteinID:
XP_009942807
LinkDB
All DBs
Position
Unknown
AA seq
761 aa
AA seq
DB search
RLESLICRVGEKSNSSLESNLEGLAGVLEADLPNYKSKILRILCTVARLLPEKLXXXXXX
XXXNNFGGEFVEAMIRQLKECLKVNMYNEAVHLVRFLSDLVNCHVIAAPSMVAMFENFVS
VTQEEDVPQVRCDWYMFAFLSSLPWVGKELYEKKDAEMDRLLSQTESYLKRRQKIHVPML
QVWTADKPHPQEEYLDCLWSQIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPP
PHTEDSVYPMPRVIFRMFDYTDDPEGPVMPGSHSVERFVIEENLHCIIKSHWKERKTCAA
QLLSYPGNNKIPLNYHIVEVIFAELFQLPSPPHIEVMYTTLLIELCKLQPGSLPQVLAQA
TEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLTQDLEKPKPKFVREVLE
KCMRLSYHQRIIDIVPASFSVLSPANPVCIYKYGDESNRSLPGYTVALCLTIAIKNKASN
DEIFSILKDVPNPNQDDDDDEGFTFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFK
TLAESDEGKLHVLRVVYEVWKNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELAHDFTR
FYIWEILHSTIRKMNKHVLKIHKELEETKARLARQHKRRDSDDDDDDDDRSSDREDGPLE
EQIERLQEKVESAQSEQKNLFLVIFQRFIMLLTEHLVRCETGGIDVFTPWYKSCIERLQQ
IFLQHHQIIQQYMVTLENLLFTAELDHHILAVFQQFCALQA
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
aggctcgagtcgctcatctgcagggtgggagagaagagcaattcctctttggagagcaac
ttggagggcctagctggtgttttggaagccgatctaccaaactacaaaagcaagatacta
agaatactatgtactgttgcacgtctgttaccagaaaagcttnnnnnnnnnnnnnnnnnn
nnnnnnnntaacaattttggtggggaatttgtagaagccatgattcgtcagcttaaagaa
tgtctgaaagtcaatatgtataatgaagctgtgcatttagttcgttttctgtctgatctt
gtgaattgtcatgtaatagctgcaccttcaatggttgctatgtttgagaactttgtgagt
gtgacacaggaggaagacgtgccccaagtacgatgtgactggtatatgtttgcatttctg
tcatctttgccttgggttggaaaggagttatatgagaaaaaggatgctgaaatggatcgt
ctcttgtctcagacagaaagctatttgaagcgccgccagaagattcatgtacccatgcta
caagtttggactgctgataaaccacatccacaagaagagtatttagactgcctttggtct
cagattcagaagttgaaaaaagaccgttggcaagaacgacacattctgaggccctacttg
gcttttgacagcattctttgtgaagcgctgcaacacaatctgcctccgttcactcctcca
cctcacaccgaagattcggtgtacccgatgccaagggttatttttaggatgtttgactac
acagatgaccctgagggccctgtcatgcctggcagccactctgttgaacgatttgtaata
gaagagaaccttcactgcatcatcaaatcccactggaaagagagaaagacttgtgctgca
cagctgttgagctatccaggaaataacaagatccccttgaactaccacatagtagaggta
atatttgctgaattgtttcaacttccatctccaccgcacattgaagtcatgtacacaaca
cttctgattgaactgtgcaaacttcagcctggctctttaccacaagttcttgcacaagcc
acagaaatgctctacatgcgtttggatacaatgaatacaacatgtgtggacagatttatt
aactggttttctcaccacttgagcaactttcagttccgttggagctgggaagattggtca
gactgtcttactcaggaccttgaaaagcccaaacccaaatttgtgagagaagttttggaa
aaatgtatgcgactctcctaccatcagcgaataatagacattgttcctgcaagtttttcc
gtcctcagtcctgctaatccagtgtgcatttacaaatatggagatgaaagtaacaggtct
cttcctggatatactgtggcactctgtttaacgattgcaattaaaaataaggccagtaat
gatgaaatcttcagcattttaaaagatgtgcctaatccaaaccaggatgatgatgatgat
gaaggatttaccttcaaccctctgaaaatagaagtctttgttcagactctgctccatcta
gctgcaaagtctttcagccactccttcagcgccctggcaaagtttcatgaagttttcaag
acgcttgctgaaagcgatgaggggaagctccatgttctgagggttgtatatgaggtttgg
aaaaaccatccacagatgattgctgtgcttgtggacaagatgattcggacacaaattgtt
gactgtgctgcagtagcaaactggatcttctcttcagagcttgcacatgattttactagg
ttttatatctgggagatcttacattccacaattcgtaagatgaataagcatgttctgaag
attcacaaagaactggaggagacaaaggcaagattggccaggcagcacaagagacgagac
agtgacgatgatgatgatgacgacgaccgaagcagtgatcgggaagatggaccgctagaa
gagcagatagagcgcttgcaggagaaagtagagtcagcccagagcgagcaaaagaatctc
ttccttgttatattccagcgtttcattatgttgttaactgagcacttggtgcgctgcgag
accggtggaattgacgtgtttacaccctggtacaagagctgtatagagagattgcagcag
atcttcctgcagcatcaccagatcatccaacagtacatggtgaccctagagaacctcctg
tttacagctgaactggaccaccacatactggctgtgtttcagcagttctgtgctctgcag
gcctga
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