Opisthocomus hoazin (hoatzin): 104338521
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Entry
104338521 CDS
T08436
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104338521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oha03019
]
104338521
Messenger RNA biogenesis [BR:
oha03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104338521
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
104338521
NCBI-ProteinID:
XP_009942871
LinkDB
All DBs
Position
Unknown
AA seq
562 aa
AA seq
DB search
MALRGLRSNTSSLFQSQKLSRVFNLTRLVQKDDTTGKQEDGPISGHAESSHPLQDAPQEN
RPVSNEDREMSQHALPSGEDDEDDSDSDSDDDDVKVTIGNIKTGAPSYMGTPMNLNLKTG
RGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYFNYGFNEE
TWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVENNIIKTEFKTDFLALVG
GRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGSKPQPPQQ
PQQPSQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPGLPPPGPI
PGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSHTPWVTTV
DKGTSSSSSSHWEYSGSRRERERERERERERERDRDRTPTTSEYNNDDERYRYYSRERSY
DFERDYRRSRDRSREREDRHRERRHRDKEESSKHKSSRRKQHESEEGESHRRHKHKKNKR
SKEEKEASEDGAQEGEEQDAKE
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggctcttcgtggtcttcgctccaacacctcgagcttgtttcagtcacagaaactctcc
agagtctttaatcttaccagactcgttcagaaagatgacaccactggtaagcaagaagat
ggaccaatttctggacatgcagaatcctctcatcctttgcaagatgctcctcaggagaac
cggccggtcagcaacgaagaccgagagatgtcgcagcatgccctgccaagtggtgaagat
gatgaagatgacagcgatagcgacagcgatgatgatgacgtgaaagttactattggcaac
ataaaaacgggagcgccgtcgtacatgggaactcctatgaatctaaacttaaaaacgggt
agaggctatggagcatctgcttcagccaagctgcagcccaaaggtattgacttagatgct
gcagggaatataaatggattgcctgttatagaagtggatttagattcatttgaagacaaa
ccgtggaggaaaccaggtgctgatctttctgattactttaattacggattcaacgaagaa
acgtggaaagcttattgtgaaaagcagcgacggcttcagcttggactggatcctgctcct
cctatcagcactgaaaataagatcacggttcagcaaggaagaacaggaaatgctgaaaaa
gaagtggaaaacaacatcatcaaaacagaattcaaaacagacttcctggctctggtggga
ggacgcatgaaggctgggcctcctccaaataggaagctgggtgggacaattgatgtcatc
ggtggccaggcaggcacaattaggagagtcgaaggaagacgtcgggataagcatgcctct
gaggaaaacccaattcaggtccttggagaccacggaagtaagccacagcccccccagcag
ccccagcagccatcacagccccaacagccacctcagcaacagccgtttgcaccaccagca
ggcccaccgcctcccccgctcgctgggccacctccaccacacttcctccaccctcctcca
ccagttacttctgttccacctcccctgcatcctccaggtctgccaccacccggtcctatt
ccagggttgttcccgccgcctctggcaccaccaccagcgctcctcattcccaccttggac
ggccagccagccagctacaataacaggcagcctcctccgttcggctacaactctgcagat
tcaggtttcattagctacccacccatctccacgtcccacacgccctgggtgacgacggtg
gacaaaggcacaagcagttccagcagcagccattgggagtactcaggctcaaggcgcgaa
agggagcgggagcgcgagcgggaacgggagagggagcgagaccgagaccgcactccgacc
actagtgaatacaacaatgatgatgaacgataccgctactacagccgagagcgcagctat
gacttcgagcgcgactaccgccggagccgagaccgcagcagggagcgagaggatcgtcac
cgagagcgcaggcaccgagacaaagaggagagcagcaagcataagtcttcgagacgcaag
cagcacgagagcgaggagggggagagtcaccggcgtcacaagcacaaaaagaacaagcgc
agcaaagaagagaaggaggccagtgaggatggtgcccaggagggagaggagcaggacgcc
aaggagtaa
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