Opisthocomus hoazin (hoatzin): 104338970
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Entry
104338970 CDS
T08436
Symbol
PAPD5
Name
(RefSeq) non-canonical poly(A) RNA polymerase PAPD5
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104338970 (PAPD5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oha03019
]
104338970 (PAPD5)
03016 Transfer RNA biogenesis [BR:
oha03016
]
104338970 (PAPD5)
Enzymes [BR:
oha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
104338970 (PAPD5)
Messenger RNA biogenesis [BR:
oha03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104338970 (PAPD5)
Transfer RNA biogenesis [BR:
oha03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104338970 (PAPD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
Polbeta
PAP_NTPase
TUTase
DUF4283
Motif
Other DBs
NCBI-GeneID:
104338970
NCBI-ProteinID:
XP_009943369
LinkDB
All DBs
Position
Unknown
AA seq
490 aa
AA seq
DB search
MSPRPEEERMRMEVVNRIENVIKELWPNADVQIFGSFKTGLYLPTSDIDLVVFGKWETLP
LWTLEEALRKHNVADENSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVKAAQLIKDF
IKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDACMPSANYG
VLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKSMLDGYRPSMLYIEDPLQPGNDV
GRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTQEVATYRDWISK
QWGMQSRTESSCNGNGVTLIVDTQQLDKCNNNLAEENEALGKPRNKTSETLSKHSSNSSS
GPLSSSSSTLSSSSDVDSDGTPCKTSKQLSCRQSTTNRVGSQEVSLESSQSSGKTQNSQT
ANTSSNTNKSQHGSARLFRSSNKGFQGPANSSHGTSVTNKQHQGSKSHHQFFHGKKRKHK
RDAALSDLCR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgtctcccagacctgaagaagagagaatgcggatggaagtggtgaacaggatagaaaat
gttattaaagagctctggcctaatgcagatgtgcagatatttggaagttttaaaaccggt
ttatatttacctacaagtgatattgatttagttgtgtttggaaaatgggagacattacct
ctttggaccctggaagaagctctcagaaagcacaatgtagcggatgaaaactcagtaaag
gttttagataaagcaactgtacctattattaaactgacagattccttcactgaagtgaaa
gttgatataagctttaatgtacagaatggggttaaagcagcccagctcatcaaagatttt
atcaagaaatatcctgtattaccgtatctagttttagtattgaaacagttcctgttgcag
agggaccttaatgaagtatttactggtggaatcggttcttatagtctttttttaatggct
gtcagtttccttcagctgcatcccagggaagatgcctgtatgcccagtgccaactatggt
gttcttttaatagagttttttgaattatatggacgtcacttcaattatctgaagactgga
atccgaataaaggatggcggctcttacgttgccaaggatgaagtgcagaaaagcatgctg
gatggctacagaccatcaatgctgtatatcgaagatccgctacagccaggtaacgatgtt
gggaggagttcatacggtgccatgcaagtgaaacaggcttttgattacgcctatgttgtt
ttgagccatgcagtttccccaatagcgaaatactatcctaacaacgaaacggaaagtata
ttaggtagaataattagagtaacgcaggaagtggccacgtacagagactggatatcaaag
cagtgggggatgcagagtaggacagagtcttcgtgtaatggtaatggagtaaccttgata
gtagatactcagcagctagacaaatgcaacaataatcttgctgaagagaatgaagcactg
ggaaaacctagaaataaaacttcagaaacacttagtaaacattcttcaaattcttcatca
ggtcctttatcatcgtcgtcgtctacactgtccagctctagtgatgtagattctgatgga
acaccttgcaaaacctctaaacagttgagttgtcgtcagtctaccacaaacagagtgggg
tcccaagaagtgtcactggaatcctcccagtcaagtgggaaaacacaaaatagccaaaca
gccaatacatccagcaacacgaacaaatcgcagcatggatctgcacggttatttcgctcc
tcaaacaaaggcttccaaggtccagcaaactcaagccatggtacctcagtcacaaacaaa
caacatcaaggcagcaaatcacaccatcagtttttccacggcaaaaagaggaaacataag
agggatgcggccctttcagacctttgtagatag
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