Opisthocomus hoazin (hoatzin): 104339244
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Entry
104339244 CDS
T08436
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
oha
Opisthocomus hoazin (hoatzin)
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oha03036
]
104339244
Enzymes [BR:
oha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
104339244
Chromosome and associated proteins [BR:
oha03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104339244
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TUDOR
CS
DEAD
Helicase_C
SHQ1-like_CS
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
104339244
NCBI-ProteinID:
XP_009943693
LinkDB
All DBs
Position
Unknown
AA seq
1229 aa
AA seq
DB search
MEVLLLEIEDPGCFWVTMKGCGPYIVDEMEYKNLNAEMSQFYDKSYKDVDGVKPLTIEEG
QIYVVFSEELKCWCRAIIKSIMYCTDHYQTECFLVDYAKYIFVKSNDIRVALEAFMQIPY
RAKRCRLYRTKPVTLRIDFFENTAKIVPAKRWDSAATRYFQNLLKATTHMKAKLCAVEDN
IFDVYLYVTIKDEKVCVNDDLVSKNFAHFEEAKENTWSSANYQENQTSLNIESLPVKSVN
PARAFRPVLFQEKISTNLETGLAVSSSFQRSSTDLNESTACIVKAIPGLPVKENTAIHRD
RLQQFLNFDLLKTHSTEDDEQSFQNLSEEKNFVFLSNKIEPSSNLETAPLFNDLKKELTR
KKFLGPTFTESYCWPPVARGCDVVAISYQGNDPFLYIAPVLTFLQLGSCYKSLPNRSGPL
ALILCPGWKKAQLVFELLKTYERCSRQLHPMLIILGQNKEEARSVKIRGCEVIVTTPYSL
LRLFEHHSLLFCRLCHLVLDEIEVLFSDATEQVFTVLDCYKKAIVTEEWVYSPHQIIAVG
TRWNKHIAHLIKEFMNNPYIVITAMEEAAICGNVQQVVRSCMNNERTAVLLRILDFNHSN
LQKVLIFTNSVNEAEMVHKALKSNSIFSLKIHKESEFNFKYILEQWTKKYSSGTRVVLVL
TDDCMQSLGITDATCVIHFSFPSPRVFGQRLHSMSDNFCKVIKDSSVDQECTKAMSVILI
TENSACHALWILRYLQYAEAEIPPELHDFTAKMVEAEEDKKFSRPLCTCLKMFGICKNRT
MCPDRHQINLQIDVPQNIPDKIIQAPGCVTILPLHIVNATNYFGRIVDKQKDQYTVLAED
INEYFKKPSNKISVKSVEKLAFYGLCEKTFYHRVQVVEISPKEEDNVFFNVKIKYIDEGR
TSQVQSYQLLQLPAKFQCLPPQAVEFIVCRVKPIDNEIEWNPKVTHYINHKIKGKPHEAK
IVHTLGNTAWVDPVVRVTRLSDLKMSVNEYNIRSEILSMGLGTDNPEHIMQLQKLCGHMK
VLHHAENLEPLGMKEDTAGPESASNPQDMSAQENSSENCNSSKITFGNHPCGGVAQTAEA
DNSTLDQHKCFYPEIKWFQNEETVTVKVKIASATDCKCEFSKEKVVFSACSGDKPYLADM
ELHQYILAEQSTCVIKDEEAILVLTKEKKGVWLKLLKNKNPHLSFDFEHWEDFEDKSPFP
VGTKKLYCAAAITEELVDSSDDSGKESDE
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcttgctgttagagattgaagatccaggttgcttttgggttactatgaaagga
tgtgggccttacatagttgatgaaatggaatataaaaacctgaatgctgaaatgagtcag
ttctatgacaaatcatataaagatgtagatggagtaaaaccactaaccatagaagaaggc
cagatttatgtggttttcagtgaggaactcaaatgctggtgtagagcgattataaagtca
atcatgtactgtacagatcattatcaaacagaatgttttcttgtggattatgccaaatac
atttttgttaaatcaaatgacattcgagttgcattggaagcatttatgcagatcccatat
agagcaaaaaggtgtagactgtatcgcacaaagccagtgacgttgcgtatcgactttttt
gaaaatactgcaaaaatagtaccagccaaaagatgggatagtgctgcgactcggtatttt
caaaaccttctcaaagcgactacccatatgaaagccaagttatgtgctgtagaagataac
atatttgatgtttatctttatgtgacaataaaggatgaaaaggtatgtgttaatgatgat
cttgtctcaaagaactttgctcattttgaggaggctaaggagaatacatggagttctgca
aattatcaggagaaccaaacatcattgaatattgagtctcttccagtgaaaagcgttaat
cctgcacgtgctttcaggccagtgctctttcaggagaaaatatcaacaaatcttgaaaca
ggtcttgcagtttccagttcctttcaaaggtcaagcacagatctaaatgaaagtactgcg
tgtattgtcaaagcaattccaggtttgcctgtaaaggaaaatacagcaattcacagagac
aggcttcagcagttcttaaattttgatcttctgaagacacactcaactgaagatgacgaa
cagagttttcaaaatcttagtgaagagaaaaactttgtctttttaagcaacaaaattgag
ccatcatcaaatctggaaacagcacccctttttaatgatctgaaaaaggaacttactcgg
aaaaaatttttgggccctaccttcacagaatcttactgttggccaccagtagctcgagga
tgtgacgtagttgctatctcataccagggaaatgatcctttcttatatattgcaccagtt
cttacatttttgcagttgggaagttgctacaaatccttgccgaacaggagtggaccacta
gcacttattttatgtcctgggtggaagaaggcacaacttgtttttgagctactgaaaaca
tatgagagatgctccagacagcttcatccgatgttgataatacttgggcagaacaaagaa
gaagctagaagtgtgaaaatccgaggatgtgaagtaattgtgactacaccgtatagcctc
ctgagactgtttgaacatcacagtttattattttgtagactttgccatcttgttcttgat
gagattgaggtactgttctctgatgctactgaacaggtttttactgttttagattgttac
aagaaagccattgttactgaagagtgggtgtattcaccgcatcagattattgctgttgga
actcgttggaataaacatatagcacacttgataaaggagttcatgaacaatccttacatt
gtgataacagctatggaagaagctgccatctgtggaaatgtgcaacaggtcgtgcggtct
tgcatgaacaatgagagaactgctgtgttactcagaatcctggactttaaccacagtaac
cttcagaaggtgctgattttcactaattcagtaaatgaagcagaaatggttcataaggca
ctgaaaagcaactcaatattttccttgaaaatacataaagagagcgagtttaatttcaag
tatatcttggagcagtggacaaaaaagtatagttctggtactcgtgtagtcttagtttta
acagatgactgcatgcagtctttgggaattacagatgcaacttgcgtgatacatttcagt
tttccttctccaagagtctttggtcagcgtctgcacagcatgtctgataacttctgtaaa
gtgataaaggattcttctgtagatcaggaatgtacaaaggccatgtcagtcattctgata
acagaaaacagtgcatgtcacgcactttggatcctgcgctatttgcagtatgcagaagct
gaaattcccccagaactgcatgattttactgccaagatggtagaagctgaagaagataag
aagttttcaaggccactgtgtacctgtcttaaaatgtttgggatttgcaagaatagaaca
atgtgtcctgatcgtcatcaaattaatttacaaatagatgtgccccagaatataccagat
aaaattatacaagcgcctggatgtgtgacaatactgcctctccacattgtaaatgcaaca
aactactttggtcgaatagtagataaacagaaggaccaatacacagttcttgctgaagac
attaacgagtattttaagaaacccagtaataaaatttctgttaaaagtgtggagaagcta
gcattttatggattatgtgagaaaacattttatcacagggttcaggttgtagagatttcc
ccaaaagaggaggacaatgtgttctttaacgtcaaaattaaatatatagatgaaggcaga
acaagtcaagttcagagctatcagctgcttcagttacctgcaaagttccagtgtctgcca
cctcaggctgtggaatttatagtttgtagagtaaaacccattgataatgaaattgaatgg
aacccaaaggtaactcattatattaatcacaaaataaaaggaaaaccacatgaagcaaag
atagtacataccttgggaaatacagcttgggttgacccagtggtccgggttaccaggctt
tcagatttgaagatgtctgtcaatgaatacaacattcggtctgagattttgtctatgggt
ctgggaactgacaatccagaacatataatgcaacttcagaagttgtgtggacacatgaag
gtactacatcatgcagagaacttggagcctttaggcatgaaggaggacacagctggtcca
gagagtgcgtccaatccacaggatatgtcagcacaagaaaattctagtgaaaactgtaat
tcttctaaaattacttttgggaatcatccatgtggtggcgtagctcaaactgcagaagca
gataactctacgctggatcagcataaatgcttttatccagaaataaagtggtttcaaaat
gaagagactgttacagtgaaggttaaaatagcaagtgcaactgactgtaaatgtgagttc
tctaaagagaaggtggttttcagtgcgtgttcaggagataaaccttatttggctgacatg
gagctgcatcaatatatacttgcagaacagtctacatgtgtgattaaggatgaagaggct
attcttgttctcacaaaagagaaaaaaggagtgtggctcaaattgctgaagaacaagaat
cctcatctgtcttttgattttgaacactgggaagattttgaagataaaagcccttttcca
gttggtaccaaaaaattgtactgcgctgctgcaataaccgaagaattggttgactcctca
gatgacagtggaaaagaaagtgatgagtaa
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