Candidatus Ornithobacterium hominis: MSHRCOH1_00615
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Entry
MSHRCOH1_00615 CDS
T09176
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ohm
Candidatus Ornithobacterium hominis
Pathway
ohm03410
Base excision repair
ohm03430
Mismatch repair
ohm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ohm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MSHRCOH1_00615 (recJ)
03430 Mismatch repair
MSHRCOH1_00615 (recJ)
03440 Homologous recombination
MSHRCOH1_00615 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ohm03400
]
MSHRCOH1_00615 (recJ)
DNA repair and recombination proteins [BR:
ohm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MSHRCOH1_00615 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MSHRCOH1_00615 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSHRCOH1_00615 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DSPc
AA_permease_N
Motif
Other DBs
NCBI-ProteinID:
CAI9428698
LinkDB
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Position
1:complement(129622..131325)
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AA seq
567 aa
AA seq
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MSKRWVLKSKSSSDQLRKLQTELHIEENLALLLSQRGIDDFDSAKKFFRPSLDDLHDPFL
MKDMQSAVERIEKAINQSENIMVYGDYDVDGTTAVSLVYLYLKQIYSNLTFYIPDRYKEG
YGVSKDGIDFAADNNIHLIISLDCGIKANEQVEYARQKNIDFIIADHHLPGENLPRAVAV
LDAKRKDCSYPYKELSGCGVGFKLTQALNTKFHLDKKFLYALLDLVAVSIAADIVPITGE
NRVLATYGLKVLNKKPRLGLAMLLPQEKKGNINISDIVFGIAPKINAAGRIHHATDAVKL
LTCENSLTARKYVSQINKLNTQRKNIDHSITDEALALLGKETEKKNTNIVYQPHWHKGVI
GIVASRLTETYYRPTVVFTKGEDNKLVASVRSIKGFDVYEALEECSDLFERFGGHMYAAG
FSMKEVHLPEFRRKFEKAVSKKINSHQKNPSIEIDTEISFKEITPKFLRILHQFQPYGPE
NLNPLFLTQNALFAGYGKRLGKNGEHLKCNLFSMDSKQIFSAIAFNMGELLPRIKEELFD
IVYSIEENHWQGKTYTQLNIKDLRFHN
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgctgggttctaaaatctaaatcttcatccgatcaacttcggaaactccaa
actgagcttcatatagaagaaaatttagcacttttgttatcacagcgcgggattgatgat
tttgattctgctaagaagtttttccgcccaagtttagatgatttgcatgaccctttcttg
atgaaagacatgcaaagtgctgtagaaagaatagaaaaagccataaatcaaagtgaaaac
atcatggtgtatggtgactacgatgtggatggcaccaccgctgtttctttggtttacctt
tatttaaaacaaatttactccaatttaactttttatattcctgatcgctacaaagagggt
tatggcgtttctaaggatggaattgactttgctgctgataataatattcatctaattatt
tcgttagattgtggcattaaagccaatgagcaggtggaatatgctcgccaaaaaaatatt
gatttcatcatagcagaccatcatttgcctggggaaaacttgcctcgtgccgttgctgtg
ttagatgctaaacggaaagactgttcttacccatacaaagaactaagcggatgtggtgtt
gggtttaaactcactcaagctttgaatacaaaatttcatcttgataaaaagtttctgtat
gctttgttagatttagtcgctgtttccatcgctgccgatattgtccccatcactggtgaa
aatcgtgttttggctacctatggcttgaaggttttgaacaaaaaacctcgcttgggacta
gccatgcttttacctcaagaaaagaagggtaatattaatatttctgatattgtttttggt
attgcccccaaaatcaatgctgcgggtagaattcaccacgcgaccgatgccgtgaaatta
ttgacttgtgaaaacagcttgactgcgagaaaatatgtaagtcaaattaataaactaaat
actcaacgaaagaatattgaccatagtattacagacgaagccttggctttgctcggcaaa
gagacggaaaaaaagaatacaaatattgtctatcaaccgcattggcataaaggtgtgatt
ggcatagttgcttctcggcttacagaaacttattaccgcccgacggtagttttcacaaaa
ggagaagacaataagctggtagcatctgttcgttccattaaaggttttgatgtttatgaa
gccttagaggaatgctctgatttgtttgagcgttttggcgggcatatgtatgcggcaggt
ttttctatgaaagaagttcatttgcctgaatttcggcgaaaatttgaaaaagctgtgagt
aaaaaaattaatagccatcagaagaatccctctatcgaaattgatactgaaattagtttc
aaagaaattacccctaaatttttacgaattcttcatcaatttcagccttatggccccgaa
aatttaaaccctttatttttaacccaaaatgctctttttgctggttatggaaaaaggtta
gggaaaaacggagagcatttgaagtgtaatctattttcaatggattccaagcagattttc
tctgcaattgcgtttaatatgggagagcttttgcctcgcatcaaagaagagctttttgat
attgtctatagcatagaggaaaatcattggcaaggaaaaacgtatacacaactaaatatt
aaagacttacgatttcacaattaa
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