Candidatus Ornithobacterium hominis: MSHRCOH1_02845
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Entry
MSHRCOH1_02845 CDS
T09176
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ohm
Candidatus Ornithobacterium hominis
Brite
KEGG Orthology (KO) [BR:
ohm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ohm03009
]
MSHRCOH1_02845 (rlmD)
Enzymes [BR:
ohm01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MSHRCOH1_02845 (rlmD)
Ribosome biogenesis [BR:
ohm03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MSHRCOH1_02845 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Methyltransf_15
Cons_hypoth95
MTS
TRM5-TYW2_MTfase
PrmA
PCMT
Methyltransf_11
Methyltransf_12
FtsJ
N6_N4_Mtase
Sp-CxC
UPF0020
2-ph_phosp
Motif
Other DBs
NCBI-ProteinID:
CAI9429131
LinkDB
All DBs
Position
1:620640..622049
Genome browser
AA seq
469 aa
AA seq
DB search
MAKNKAWIIEDVHLLTAGAKGAAIAKPEGQKTIMVRNGVPGDVVDVRIVKKKKRFLEGKV
VTIKKASADRIEPNCQHFGICGGCKWQNMTYEKQLFYKEQEVRDHLERIAKIQPEEFSPI
LGSEQQFWYRNKMEFSFSNQRWVTEEEIKEKGEIENRNALGFHIPGMWSKILDIEKCWLQ
EEPSNQIRRSLKEFADEQGLAFFDPTEQSGLLRTLMIRMTTTGEIMVLVQFFENQPENIQ
KVLGFLNQKFPEITSLLYAINPKGNDSIYDLEILNFKGQNFITEEMEGLKFKIGPKSFYQ
TNPQQALHLYQITRDFADLDGSEIVYDLYTGTGTIAQFIAQKAKKVIGVESVPEAIVAAR
ENAAFNQIDNCTFYVGDMKTVFTDAFVQENGYPDVIVTDPPRDGMHPKVVENLLNIAPEK
IVYVSCNTATQARDLEKLKEKYTLKKVQPVDMFPQTYHVENVALLTLKK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaataaagcttggattattgaagacgtccaccttttgacggcaggagctaaa
ggtgctgcaattgcaaaacccgaagggcaaaaaaccatcatggtgcgcaatggcgttcct
ggagatgtggtggatgtacgaattgtgaaaaagaaaaaacgatttctggaagggaaagtg
gttactattaaaaaagcttctgctgaccgaattgagccaaattgtcaacatttcggaatt
tgcggtggctgcaaatggcaaaatatgacatatgagaagcaacttttctacaaagagcaa
gaagtccgtgaccatttggagcgtatcgctaaaatacaaccagaggaattttcaccgatt
ttgggctctgaacagcaattctggtatcgtaataaaatggaattttcatttagcaatcag
cgttgggtgactgaggaagaaatcaaagaaaagggtgaaattgagaaccgtaacgctttg
ggattccatatcccagggatgtggagcaaaattttggatatagaaaaatgttggctacag
gaagagccttctaatcaaattcgtagaagcctgaaagaatttgctgatgagcaaggatta
gctttttttgaccccacggaacaaagcggcttactgcgaacgttgatgataaggatgacg
acaacgggggaaatcatggtgttggttcaattctttgaaaatcaaccagaaaatattcaa
aaagttttaggttttttgaatcaaaaatttcctgaaattacttctctgctatacgctatc
aacccgaaaggcaatgattccatctatgatttggaaatattaaactttaaaggtcaaaat
ttcattacagaagaaatggagggtttgaaattcaaaatcggccccaaaagtttttaccaa
accaatcctcagcaagctttgcatttgtatcagattacacgagattttgctgacctagat
ggatctgagatcgtatatgatttgtacaccggcacgggaactattgctcaatttattgct
caaaaagcaaaaaaagttattggagtagagtctgtgccagaagctattgtcgcagctaga
gaaaatgcggcgtttaatcaaattgataattgtacgttttacgtcggtgatatgaaaact
gtttttaccgatgcctttgtgcaagaaaatggatatcctgatgtgattgtgaccgacccg
ccgcgcgatggtatgcaccccaaagttgtggaaaatcttctgaatattgctccagaaaaa
atcgtctacgtaagttgtaatactgcaacacaagcgcgagatttggagaaattaaaagag
aaatataccctaaaaaaagttcaaccagtcgatatgtttccgcagacatatcatgtagag
aatgttgccttattaactttaaaaaaatga
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