Candidatus Ornithobacterium hominis: MSHRCOH1_06855
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Entry
MSHRCOH1_06855 CDS
T09176
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ohm
Candidatus Ornithobacterium hominis
Pathway
ohm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ohm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSHRCOH1_06855 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ohm03400
]
MSHRCOH1_06855 (mfd)
Enzymes [BR:
ohm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSHRCOH1_06855 (mfd)
DNA repair and recombination proteins [BR:
ohm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MSHRCOH1_06855 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
CAI9429913
LinkDB
All DBs
Position
1:1431858..1435226
Genome browser
AA seq
1122 aa
AA seq
DB search
METISIQKISQQFKNQKDFENIIHFLNQEEPQHLQCKGLIGGAFSFFAHQLFIATQRSLL
YIFDDAENAAYCLNELEDLLDKDQVLYFPASYRRPYEIEEINNANVVLRTEVLNKLSSSK
KPRIIITTSNALTEKVVTKKSLTEKTYRLKVGDEISVDFLNEILFSFDFKRTDFVTEPGE
FSVRGGIIDVFSYADEKPYRISFFGDEIERIKSFDLETQLSTAEVKSFVIVPNLENKLNT
EKRQSFLEFLNSKTLILGQNLILTKSLVQSNFEKSEKAFENLNSEIQHKNPEDLFLKAEN
FLTEISNFDVLEFSAQTLLSPHAKFSYSQTPQPAFNKKFDLLIDALQEQSKGGFRNYLFC
SSAKQIQRFQEIFQDIGREVQFTPVLASIHAGFVDKDLKIACFTDHQIFERYHKFNLRNS
FSKKESLTLKELTSLQVGDYVTHIDHGLGKFGGLKKINVNGTMQEAIKLVYRDNDILYVS
IHSLHKIAKYTGKDGQIPKVNKLGSPAWKNLKNKTKKKVKEVAFDLIKLYAKRKLDKGFA
FAPDTYLQNELEASFIYEDTPDQLKATEDVKTDMESEQVMDRLICGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYKTFKERLADFPVRVEYLNRFKTTKQKNEILKDLAEG
KIEILIGTHQIVGKKVIYKDLGLLIVDEEHKFGVSIKDKLKTLRSHLDTLTLTATPIPRT
LQFSLMAARDLSIIRTPPPNRQPVETKIIGLNEEQIRDAVFYELQRGGQVFVIFNRINGL
KEMAGMIQRLVPEAKIAVGHGQMDGKKLEKTLLDFMDGKFDVLVSTTIVESGVDVPNANT
MLIVDAQNFGLADLHQMRGRVGRSNRKAFCYLITPPLVTLTDEARKRLQAIEQFTDLGSG
FNIAMKDLEIRGAGNLLGAEQSGFMAEMGFDTYQKILNEAIEELKYSDEFNYLFQDELKR
KEDYVSDFNLDADLELLIPDHYVNNVEERMALYNELAQVENQNQLNQFRENLIDRFGNLP
TQARDLLKSMELKWLAEKLGMEKIVLKNGIFLGYFINNPQSPFYQKPVFQKIMQFLSQNP
NFGILKEKKVRGQEFPSLLLRVEQVSTIDLAYLKLEEISKAL
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
ttggaaacaatttctattcaaaaaatcagtcagcaattcaagaatcaaaaagattttgaa
aatattattcattttttgaaccaagaagaacctcagcatttgcaatgcaaaggattaatt
ggcggagctttttctttttttgcacatcaactttttatagcaacgcaacgctcattactc
tatatttttgatgacgctgaaaacgcagcatattgcctgaacgaactggaagatttgctc
gacaaagatcaagtgctttacttcccagcaagttatcgccgaccctatgaaattgaggaa
atcaataatgctaatgtagttttaagaactgaggtgctcaataaattatcttcttctaag
aaaccaaggattatcatcactacttctaatgctttaacagaaaaggtcgttacaaaaaaa
tcactcaccgagaaaacttatcggctaaaagttggtgatgaaatttcagtcgatttcttg
aatgaaattttattttcttttgatttcaaaaggacagattttgtgaccgaaccaggcgaa
ttctcggtgcgtggtggaattattgacgttttttcttacgccgatgagaagccgtatcgc
atttctttttttggtgatgaaatcgaacgcatcaaatcttttgatttggaaactcagctt
agcacagcagaggtgaaatcattcgtcattgttccgaatttagagaataagttaaatacc
gaaaaaagacaatctttcttggaatttttaaattcaaaaacgcttattttagggcaaaat
ttgattttaactaaaagtttagttcaatcaaatttcgagaaatctgagaaggcttttgaa
aatttaaactcagaaattcaacataaaaacccagaagatttatttttaaaggctgaaaat
ttccttacagaaatttcaaattttgatgtgttagaattctctgcccaaaccttactctca
ccacacgctaaattttcatattcgcaaacgcctcagccagcgttcaacaaaaagtttgac
ctcttgattgatgctttgcaggaacaaagtaaaggcggttttagaaattatcttttttgc
tcctcggccaagcaaattcagcgatttcaagaaatttttcaagacatcggtagagaagtt
cagttcacaccagtactagcgagcattcatgcggggtttgtagataaagatttaaaaata
gcttgctttaccgaccatcaaatttttgaacgctaccataaatttaatttaagaaatagt
ttttctaaaaaagaaagcctcacactcaaggaattgactagcctgcaggttggcgactac
gtgacgcatatcgaccacggcttgggcaaatttggtgggttgaaaaaaatcaatgtcaac
ggaacgatgcaagaagccatcaaactggtttacagagataatgatattttatatgtcagc
attcattctttgcacaaaattgctaaatatacgggtaaagacgggcaaattcctaaagtg
aataaattgggttcgcctgcttggaaaaatttaaaaaataaaaccaagaaaaaagtcaaa
gaagttgcttttgatttaattaaactttacgccaagagaaaattagataaaggttttgcg
tttgctcctgatacttacttgcaaaacgaactagaagcgagtttcatctacgaagatacg
ccagatcaactcaaggcaaccgaagatgtgaaaaccgatatggagagtgagcaggtcatg
gatcgtttgatttgcggtgatgtcggttttgggaaaactgaagtggctattcgtgccgca
ttcaaagctgcaacggatggaaaacaggtagctgtgctggttcctactacaattttggct
tttcagcattataaaacattcaaagaacgtttagcagattttcctgttcgggtggaatac
cttaaccgcttcaaaacaacaaagcaaaaaaatgagattttaaaggatttagctgaaggg
aaaattgaaattctcatcggtacacaccagattgttggcaaaaaagtgatttataaagat
ttaggcttattaatcgttgatgaagaacataaattcggggtttccatcaaagacaaactc
aaaactttaaggtctcatttagatacacttacactcactgcaacaccaataccacgaact
ttgcaattttccttaatggcagctcgggatttgtctatcatcagaactcccccgcccaat
cgccagcctgtggaaacaaaaatcattgggctgaacgaggaacaaattcgtgatgcggtt
ttctatgaattgcaacgtggtgggcaagtttttgttatttttaaccgaatcaatggactg
aaagaaatggcaggaatgattcagcgcctagtgcctgaagccaaaattgctgtcggccac
gggcaaatggacgggaaaaagttagaaaaaactttgctggatttcatggacgggaaattt
gatgtcttggtttctaccacgattgtagaaagtggtgtcgatgtgccaaatgctaacaca
atgctgattgtggatgcgcaaaattttggtctggcagatttgcaccaaatgcgtgggcgc
gtggggcgaagcaaccgaaaagcattttgctacctcatcacgcctccactcgttactttg
acggatgaagcacgcaaaagattacaggccattgagcaatttacagatttgggctcggga
ttcaatattgcaatgaaggatttagaaatccgtggagcaggaaatttactgggtgcagag
cagtctggctttatggctgaaatgggatttgatacgtaccaaaaaatactaaacgaagcg
atagaagaattgaaatattctgacgagtttaattatttatttcaagatgaattaaaaaga
aaagaagattatgtttctgattttaatttagatgctgatttagaattactgattccagac
cattatgtgaacaacgtagaagagcgaatggcgctttataacgagctagcacaagttgaa
aatcaaaatcaactgaaccaattcagagaaaatctaatcgatcggtttgggaatttgcct
acacaagctcgtgatttactaaaatctatggaattaaagtggcttgcagaaaaactgggc
atggaaaaaatcgttctgaaaaatggaatcttcttgggttattttatcaacaatcctcag
tcgcctttttatcagaagccagtttttcaaaaaatcatgcaatttctaagtcaaaatcct
aactttggtatattgaaagagaagaaagtaagagggcaagagtttcctagtctacttttg
cgagtagagcaagtctcgactattgatttggcttatctaaaactggaagaaatttctaaa
gccttataa
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