Candidatus Ornithobacterium hominis: MSHRCOH1_07085
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Entry
MSHRCOH1_07085 CDS
T09176
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ohm
Candidatus Ornithobacterium hominis
Pathway
ohm02020
Two-component system
ohm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ohm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MSHRCOH1_07085 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MSHRCOH1_07085 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ohm03021
]
MSHRCOH1_07085 (rpoN)
Transcription machinery [BR:
ohm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MSHRCOH1_07085 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
TBP-binding
HTH_12
Clp_N
DUF3819
Motif
Other DBs
NCBI-ProteinID:
CAI9429954
LinkDB
All DBs
Position
1:1479994..1481463
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AA seq
489 aa
AA seq
DB search
MLKQELQQKLQQKLSPQQIQLMKLVQLPTVAFEQRVKEEMEENPALEDQPDYEEDDLFKD
NSDELYNDEMEERDSIDDIEINVDEYLSDDEFPSYKSYTNNYSADDDEKSIPYAQGTTFY
DHLKEQLHMFRLDEQDLTLADFLIGNLDEDGYLRREVRSIVDDLAFNLNISTTEEHLTHL
LEDYIQRLSPTGVGARDLKECLLLQLKRKTQTDEVELAYELINQSFDSFAKKHYKKLLKK
FDIDEEELRNAIEEIEGLNPKPGKAFGGNTKIIEHIVPDFTIRIIEGELELTLNGRNAPQ
LHVSRQYAEMFDTYKKSENKNKEQKKAVLFVKQKLDAAKWFIEAIQQRQNTLMATMTAIM
NYQKDYFLTGDDRDIRPMILKDIAEIVDMDISTISRVANSKYVNTPYGTFLIKELFSESM
TNDDGEEVSTREIKKILSEIVENENKRKPLTDEKLAKQLKENGYSIARRTVAKYREQLNI
PVARLRKEI
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaacaagaattacaacagaaacttcaacagaaattatctcctcagcaaatccag
ctgatgaaacttgtgcaattgccgactgtagccttcgagcaacgggtaaaagaggaaatg
gaggaaaaccctgctctagaggatcagccagattatgaagaagatgacctctttaaagat
aattctgatgaattgtataatgatgagatggaggaacgtgatagcattgatgatattgaa
attaatgtggatgaatatttgagtgacgatgaatttccttcttataaatcttataccaac
aattatagcgctgatgatgacgaaaaaagtattccctacgctcagggaaccactttctat
gaccacctgaaagagcaactccacatgtttcgactggatgaacaggatttgactttggct
gattttctcatcgggaatttggatgaagatggctatttacgcagagaagttcgttctatt
gttgatgatttagcttttaatctcaatatttctactacagaagaacatctgacgcatttg
ctagaagattacattcagcggctcagccctactggtgttggcgctagagatttaaaggaa
tgtttgctcttacagttaaaacgaaaaactcaaaccgatgaggtggaattggcttatgaa
ttaatcaatcaatcgtttgacagttttgcgaagaagcattacaaaaaattgcttaaaaaa
tttgacattgacgaagaagaactgcgcaacgctatcgaagaaatagaaggattaaacccc
aagccaggaaaagcttttggtggaaacactaaaatcatagagcacattgttcctgatttc
acaatccgtatcattgaaggtgaactggaattgacactgaacgggagaaatgctccgcaa
ctgcatgtttctcggcaatatgcagaaatgtttgatacttataaaaaatccgaaaataag
aacaaagagcaaaaaaaagccgttctttttgtcaaacaaaaattagatgcagccaaatgg
tttatcgaagccattcaacaacggcaaaatacactgatggctacaatgacggccattatg
aattaccaaaaagattatttcttgactggtgatgatagagacatccgcccgatgatatta
aaggatattgcagaaatcgtcgatatggatatttctaccatttctcgggtagctaattct
aaatacgtcaacacaccatatggaacgttcttgataaaagaacttttctctgaaagtatg
actaatgatgatggcgaggaagtttctacacgagagataaagaaaatcttatctgaaatc
gtagaaaatgaaaataaacgcaaaccccttaccgacgaaaaattagctaaacaattgaaa
gaaaacggctattctattgctcgccgtacggttgccaaataccgtgaacagctcaacatt
cctgtagcacggctgcgaaaagaaatttaa
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