Candidatus Ornithobacterium hominis: MSHRCOH1_07200
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Entry
MSHRCOH1_07200 CDS
T09176
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
ohm
Candidatus Ornithobacterium hominis
Pathway
ohm03030
DNA replication
ohm03430
Mismatch repair
ohm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ohm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSHRCOH1_07200 (holA)
03430 Mismatch repair
MSHRCOH1_07200 (holA)
03440 Homologous recombination
MSHRCOH1_07200 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ohm03032
]
MSHRCOH1_07200 (holA)
03400 DNA repair and recombination proteins [BR:
ohm03400
]
MSHRCOH1_07200 (holA)
Enzymes [BR:
ohm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MSHRCOH1_07200 (holA)
DNA replication proteins [BR:
ohm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MSHRCOH1_07200 (holA)
DNA repair and recombination proteins [BR:
ohm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MSHRCOH1_07200 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
DUF553
DUF3337
DUF5906
Motif
Other DBs
NCBI-ProteinID:
CAI9429977
LinkDB
All DBs
Position
1:1511732..1512739
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AA seq
335 aa
AA seq
DB search
MKDFTKYISQIKNKEFAPIYFLYGDETFFIDEITAALQENVLTEEEKAFNQHIFYANEID
AEDVILQARQYPMMAERQLIIVKEAQAYDKQLNAFEAYFKSPVPSTILVINYKYKKPDGR
TAYAKAVKANGLLLESNKLYENQIPEWIYNLLKQRKLKAQPNVIQLLAESIGDDLSRISN
EVKKLAMVLNPGEELTPELVEKHIGISKDYNIFELTKAIGVKNKKKAYLIAHHFTQNPKD
HNFVFYLGLIFSFFHKLMLYHALPDKSRTSVAKILGVSPFFVKEYEIAAQNYPLKKVTAI
ISLLRDTDMKSKGLGVGSNTTEKDLYNELLFKILH
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagattttaccaaatacatcagccaaatcaaaaacaaagagttcgcacctatctat
tttctatatggggacgaaacctttttcattgatgaaatcactgcagcgctgcaagaaaac
gtcttgactgaagaagaaaaagccttcaatcaacatatcttttacgccaatgaaatagat
gctgaggacgttatactacaagctcgccaatacccgatgatggcagaacgccagctcatc
atcgtgaaagaagctcaagcctacgataagcaattgaacgcctttgaagcttatttcaaa
agtccagtgccgtccaccattttggtcattaattataaatacaaaaaacctgacgggcgc
accgcttatgctaaggcggtaaaagccaacgggctcttgctggaatctaataaattgtat
gagaatcaaatccctgaatggatttataacttactgaaacaaaggaaattaaaagctcaa
cccaatgtcatacaacttctggcagaatccatcggtgatgatttatctcgcatttctaat
gaggtgaagaaattagctatggttttgaatcctggcgaagaattaacgcctgaattggta
gagaaacacatcggcatcagcaaagattacaatatttttgagctgaccaaagccatcggt
gtcaaaaacaaaaagaaggcatacctcattgcacatcattttacccaaaaccccaaagac
cacaattttgtattttatttaggcttaattttttctttttttcacaaactgatgctttac
cacgccttgcccgataagtcacggacaagcgtagccaaaattctgggtgtttcacctttc
tttgtgaaagaatatgaaatagccgcacaaaattacccgctcaagaaagtcacggctatt
atttcacttttacgcgatactgacatgaagtccaaaggcttaggcgtaggctcaaacacg
acagaaaaagatttgtacaacgaacttttatttaaaatccttcattaa
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