Candidatus Ornithobacterium hominis: MSHRCOH1_07370
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Entry
MSHRCOH1_07370 CDS
T09176
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ohm
Candidatus Ornithobacterium hominis
Pathway
ohm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ohm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSHRCOH1_07370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ohm03021
]
MSHRCOH1_07370
03400 DNA repair and recombination proteins [BR:
ohm03400
]
MSHRCOH1_07370
Enzymes [BR:
ohm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSHRCOH1_07370
Transcription machinery [BR:
ohm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSHRCOH1_07370
DNA repair and recombination proteins [BR:
ohm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSHRCOH1_07370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
CAI9430011
LinkDB
All DBs
Position
1:complement(1551092..1552090)
Genome browser
AA seq
332 aa
AA seq
DB search
MAILNFIKPDKVVLIEADDKSGQFEFRPLEPGYGLTVGNALRRVLLSSLEGYAFTSIKIE
GVDHEFSTIAGVVEDVTEIILNLKKVRLKHQIEKNDEETINCSISGKTKLTAGDLSKFIS
GFQILNPDLVICHMDKNVELNFTLTVNKGRGYISAEENLLDVEDLPIGTIKIDSIYTPIK
NVKYLIENYRVEQKTDYEKLILDIETDGSISPKDALTEAAKILIHHFMLFSDERITLETE
EVSATEAYDEEALHMRQLLKTKLVDLDLSVRALNCLKAAEVDTLGELVSYSKADLMKFRN
FGKKSLTELEELVDRKDLSFGMDVSKYKLDLD
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggctatattaaattttattaaacccgataaagtcgttcttattgaagcagatgataag
tctggtcaatttgaatttcgacctttggaacctggctatggattaactgtcggaaacgct
ttgcgtcgggttttattgtcttctttagaaggttatgcttttacctctatcaaaattgaa
ggtgttgatcatgaattttctaccatagctggtgttgttgaagatgttacagaaattata
ttaaatttaaagaaagttcgtctaaaacatcagattgagaaaaacgatgaagaaactatc
aattgtagcatttcaggtaaaacaaaattgaccgcaggagatttatctaaatttatctct
gggtttcaaattttaaatcctgatttggttatttgccacatggacaaaaatgtagaatta
aatttcactctaacagttaataaagggagagggtatatttcagcagaagagaaccttctt
gatgtagaagatttacctatcggaactattaaaattgattcaatctatacccctattaaa
aatgttaagtatttgatagaaaattatagggttgaacaaaaaactgattatgaaaaatta
attttagatatagaaactgatggttctattagccctaaagatgcattaacagaagccgct
aaaatattaattcatcattttatgttatttagtgatgagagaatcacattggagactgaa
gaggtttcagctacagaagcttatgatgaggaagctcttcatatgcgccagttattgaaa
actaaactggtggatttagatttgtctgtgagagcgcttaattgtctaaaggcagcagaa
gtagatacgttaggagagctagtaagttattctaaagcagatttgatgaaatttagaaat
tttggaaaaaaatctttgacagaattagaagaattggttgatagaaaagatctttctttc
ggaatggatgttagcaagtataaattggatttagattag
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