Owenweeksia hongkongensis: Oweho_3395
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Entry
Oweho_3395 CDS
T01677
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oho
Owenweeksia hongkongensis
Pathway
oho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Oweho_3395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oho03019
]
Oweho_3395
03400 DNA repair and recombination proteins [BR:
oho03400
]
Oweho_3395
Enzymes [BR:
oho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Oweho_3395
Messenger RNA biogenesis [BR:
oho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Oweho_3395
DNA repair and recombination proteins [BR:
oho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Oweho_3395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
RPC3_helical
HHH
SAP_new25
Motif
Other DBs
NCBI-ProteinID:
AEV34345
UniProt:
G8R5M9
LinkDB
All DBs
Position
complement(3808639..3810834)
Genome browser
AA seq
731 aa
AA seq
DB search
MKIATVHDELKKYFGFDQFKGNQEAVINNVIAGNDTFVIMPTGGGKSMCYQLPALMQSGT
AIVVSPLIALMKNQVDSIRGFSEEHGVAHVLNSSLTKGQTEQVKEDIRNGITKLLYVAPE
SLTKEENIEFLQGCDISFYAIDEAHCISEWGHDFRPEYRNLKNIITAIGRKPVIALTATA
TPKVQGDIQKNLGMDDAQVFKASFNRPNLYYEVRPKTEHVDRDIIKFIKGHMGKSGIIYC
LSRKKVEELAETLQVNGINALPYHAGLDAKSRVRHQDAFLMEEADVIVATIAFGMGIDKP
DVRFVMHYDMPKSLESYYQETGRAGRDGGEGICIAFYAYKDIEKLEKFLHGKPVSEQEVG
MQLLQEVVAFAETSMNRRKFILHYFGEEFDEENGPGAKNDDNSQHPKKQFEAKDDIKLVL
ETIAATNERFKALPIVNILIGNKTTMVKQHKSDQLDQFMKGADHDDKYWMSVIRQAVVTG
LLKKDIEKYGVLNLTEAGKDFIKNPKSFMMSEDHNYESTEGDDDIITAGKAGGAAFDETL
YGMLKDLTRKVAKEKEVPPYAVFQEPSLNEMAMNYPTTLDELKNISGVGEGKAKKFGKPF
VALIQKYVEDNNIDKPDDFVVKSVVNKSGLKVYIIQSTDRKLPLEDIAASKGITMEDLVC
EIENIVNSGTKVNIDYYIESLLDEEQIEEITEYFLESDSDDLKDAHEEFDGDYDEDELRL
MRIKFMSDVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaagatagccacagtccacgatgaattgaaaaagtattttggctttgatcaatttaag
ggcaaccaggaagcagtaataaataatgtaattgccggaaatgacacttttgtgattatg
cccaccgggggcggaaaatccatgtgctaccaacttccggccctgatgcaatcaggaacc
gccattgtagtttctccactaattgctttgatgaaaaatcaggttgatagcattcgtgga
ttctccgaagaacatggtgtagcacacgtgctaaactcatcccttaccaaagggcaaact
gagcaagtaaaggaggatattcgaaacggaattaccaaattgctttacgtagctccggaa
tcattgaccaaagaagagaacattgagtttcttcaaggttgtgatatttctttctatgct
attgatgaagcacactgtatatcagaatggggacatgatttccgtcctgaatacaggaat
cttaaaaatattattaccgccattggccgtaagccagtgatagcacttaccgcaactgct
acccccaaggtacaaggcgatattcaaaagaatttaggaatggatgatgcgcaggttttt
aaagcctcgtttaaccgtcctaacctttattatgaagtacgtccaaaaactgaacatgta
gaccgtgacatcattaaatttataaaaggtcacatgggtaagagcggtattatttactgt
ttgagccgcaagaaagtggaggagcttgcagaaacccttcaagttaatggcatcaatgca
ctcccctatcatgcaggtctggatgctaagtccagagttcgtcatcaggatgctttcctt
atggaagaggcagatgtgattgtagctaccattgcatttggaatgggtatcgacaaacca
gatgtgcgttttgtaatgcactatgatatgccgaaaagccttgaaagctattatcaggaa
acagggcgtgcaggacgtgatggaggcgaaggtatttgtattgccttttacgcttataaa
gacattgaaaagcttgaaaaattccttcacggaaaaccagtttctgagcaagaagtggga
atgcagctgttgcaggaagtagtggctttcgcagaaacttcaatgaatagaagaaagttt
atccttcattattttggtgaagaatttgacgaagaaaacggtcctggtgccaagaatgat
gacaacagtcagcatcctaaaaaacagtttgaagccaaggatgatatcaaattggtactt
gaaactatagctgccaccaatgaaagatttaaggcattacccatagtaaatatccttatt
gggaataaaaccaccatggtgaagcaacataaatcagatcagcttgatcagtttatgaaa
ggtgcagatcatgatgataaatactggatgagcgttattcgccaagcggtggtaacaggt
ctgcttaaaaaggatatcgaaaaatatggagttttaaatctcaccgaagctggaaaggat
tttatcaaaaatcctaaaagctttatgatgtctgaagatcataactatgaatctacagaa
ggtgatgatgatataatcacagctgggaaagccggtggtgctgcttttgacgaaactctt
tatggaatgcttaaggaccttacacgtaaagtggctaaggaaaaagaggtaccgccttat
gcagtattccaggagccttcattgaatgagatggcaatgaactatcctaccaccttagat
gaacttaagaacattagcggtgtaggtgaaggaaaagccaaaaaatttggaaagccgttc
gtagctcttattcaaaagtatgttgaagataataacattgacaaaccagatgactttgtt
gtaaaatcagttgtaaacaagtccgggctcaaggtttatatcatccagagtactgacaga
aagttacccttagaagacattgctgcttctaaaggtatcaccatggaagatcttgtttgt
gaaattgaaaacatagtaaacagtggcaccaaagtaaatatcgactattacattgagagc
ctgctggatgaagagcaaattgaggagattacagaatacttccttgagtcggatagtgat
gatctaaaagatgcccacgaagaatttgatggagattatgacgaagatgagcttcgcctc
atgcgcattaagtttatgagtgatgtagctaactaa
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