Oceanobacillus iheyensis: OB0063
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Entry
OB0063 CDS
T00093
Name
(GenBank) transcription-repair coupling factor (TRCF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oih
Oceanobacillus iheyensis
Pathway
oih03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OB0063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oih03400
]
OB0063
Enzymes [BR:
oih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OB0063
DNA repair and recombination proteins [BR:
oih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OB0063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAC12019
JAMSTEC:
OB0063
UniProt:
Q8EU31
LinkDB
All DBs
Position
60559..64080
Genome browser
AA seq
1173 aa
AA seq
DB search
MKAIHTFLKSKEDIHSIVNGVTSGMKEQMIAGLSGSARSLVISAIHESIRRPVLIVTHQL
AQAQQLYDDFVELVDDERVYLYPVNELIASEIAIASPELRAQRIEALTEWTRHKSGILIA
PVAALKRILPPQNYWDNYQLLFKLGNDIKIDHYLSSLVDMGYEHASMVTSPGEFSKRGGI
IDIYPITEKHPIRIELFDEEVDSIRYFDAESQRSLDKLDEVTIGPASELLLTDEDLLKTS
EQLEEALATTLKKVNKPEAKEQLVEVIEHDITRFKQLERFQEMYKYIGYLYSNPASLLDY
LPSNGLVFFDEMSRIGETATNLDHEEAEWYASLLEGNKMVQNSRFSFSWDEVMEGMNQQR
VYMSVFMRHIPNTNPENVINLSSRTMQEFHGQMHLFKNELQRWEKGDYSVIILAADEQRA
EKVHSILDDYDIETQISKKEPVLPVKMPTIIVGNIQSGTEFPMHKLAVVTEQELFKKRMK
HKRKQPKVSNAERIKSYQELKIGDYVVHANHGVGKYLGIETLEVSNLHKDYMLIKYSGDD
KLFVPIDQIDLVQKFVGSEAKEPKLYKLGGTEWTKVKRKVQSSVEDIADDLIKLYAEREA
KQGYAFSPDSELQHEFEASFPYQETDDQLRCIQEIKEDMEKERPMDRLLCGDVGYGKTEV
AIRAAFKAISDGKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTKKQQTETTK
GLKSGNVDVVVGTHRILSKDVEYKDLGLLIVDEEQRFGVKHKEKIKQLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVTEYNPIFMREAIEREMGRGGQVFFLYN
RVESIDKIARDLGMLVPEAKIAVAHGQMNESELENVIFSFLEGEFDILVSTTIIETGVDI
PNVNTLIVNHADYMGLSQLYQLRGRVGRSNRVAYAYFTYQKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGTGNLLGSQQHGFIDSVGFDMYSQMLKDAIDARKAGKEIEEITP
FEPELSLKLDAYIPDEYLEDEKQKIEIYKQFQTLDSQEAIGDLKDELIDRFGDYPQEVEH
LFTVSEMKMYAKTQRVESILETPKKIEMLIDESRSQEIDGSKLFALANEYGRDIGLGTDN
QKLKIGIKWSKDSKYKRYETVTSFIKQLDKTNR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccattcatacatttttaaaatcaaaagaagatattcattctatcgttaatgga
gtaactagtggaatgaaagaacagatgatagcaggattaagtggttctgctagaagttta
gtcatatctgctattcatgaatcgattcgtcgaccagtgttaattgtgacccatcagtta
gcgcaggctcagcaactatatgatgattttgtagaactagtagatgatgaacgtgtctac
ctttatccagtcaatgagttgattgcttctgaaattgcaatagcaagtccggaattacgt
gcacagcgaattgaagcattgacagaatggacacgccataaatcaggaattttgattgca
ccagtagctgccttaaaacgtattcttccaccgcaaaattattgggataattatcagctc
ttatttaaattgggcaatgatattaagattgatcattatctaagttccctggtagatatg
ggatacgaacatgcctctatggttacctccccaggagaatttagtaagcgtggaggaatc
atcgatatttatccgattacagaaaaacacccaatccgtattgaactttttgatgaagaa
gttgactctattcgttatttcgatgcggagtctcaacgctcattggataaacttgatgaa
gttaccattggtccggcaagcgaattattattaactgatgaggacctactaaaaacttcc
gaacaattagaagaagcattagcgactacattaaaaaaagtaaataaaccagaagcaaaa
gaacaactggtagaggttatcgaacatgatattacacgtttcaaacaattagagcgtttt
caagaaatgtataaatatatcggatatctgtactctaatccagctagtttattagattat
ctcccaagtaacggtcttgtcttctttgatgagatgagtagaattggtgaaacagcaaca
aacttagaccatgaggaagcggagtggtatgccagccttttggaaggaaataagatggtt
caaaatagtcgattttcctttagttgggacgaagttatggagggcatgaatcagcaacgt
gtatatatgtctgtatttatgcgtcatatcccaaataccaatccagagaatgttattaat
ctatcgtctcgaacaatgcaggagttccatggtcaaatgcatttatttaaaaatgaatta
caacgatgggaaaaaggagactactccgtcataatacttgctgcagatgagcaaagagct
gaaaaggttcattccattctagatgattatgatatagagacacaaataagtaagaaagaa
cctgtattaccagtaaaaatgcctactattattgttgggaatatccagtctggaacggaa
tttcctatgcataagctagcggttgttacagagcaagaattgtttaaaaagcggatgaag
cataaacgaaagcaaccgaaagtatcgaatgccgagcgtattaaaagttaccaggaactt
aaaataggagattatgttgtccatgccaatcacggagtgggtaagtatttaggaatagaa
acactcgaagtaagtaacttgcacaaagactatatgttaatcaaatattctggtgacgat
aagctatttgtaccgattgatcaaattgatctcgttcaaaaatttgttggatcagaagca
aaggaaccaaaattatataagctcggtggaacggaatggacgaaagtaaaacggaaagta
caatcgtctgttgaagatattgctgatgaccttattaaactatatgcagaaagggaagcg
aagcagggttatgccttctcgccagactctgaattgcaacatgaattcgaagcatcattt
ccttatcaagaaacagacgatcagttacgctgtatccaggaaattaaagaagatatggaa
aaagaacgtccgatggatcgattgctttgtggagatgttggctatggaaaaaccgaagtg
gcaatccgtgcggcgtttaaagcaatatcagatgggaaacaagttgcgatattagttcca
acaacgattttagcacagcagcattatgaaaccattcgagaacgttttcaagattatccc
atcaatatagggctattaagtcgttttcgtacaaaaaaacagcaaacagagacaacaaaa
ggcttaaagagtgggaatgttgatgtagttgtcggcacccatagaatactatcaaaagac
gtagagtataaagacttgggattattaatcgtcgatgaagaacagcgatttggggtaaag
cataaagaaaagataaaacaattaaaaacaaatgtagatgtacttacattaacagctaca
ccaatcccacggacattacatatgtcaatgttaggggtacgggatttatctgttattgag
acgccaccagagaatcgttttccgattcagacgtatgtaactgagtataatccaattttc
atgagagaagcaatcgaacgagagatgggaagaggcggccaggtcttcttcttatataac
cgtgtggaaagtatagataagatagctcgtgacttaggcatgcttgttccagaagcaaaa
attgcggtagcccacggtcaaatgaatgagtctgaattagagaatgttatctttagtttt
ctagaaggtgaatttgatattctcgttagtacgactattattgaaacaggggtagacata
ccgaacgtaaacacattaatcgtcaatcatgccgactatatgggattaagtcagctctat
cagttacgtggtagagtaggaagatcaaatcgtgtagcatatgcatactttacgtatcaa
aaagataaagtactaacggaagtcgcagagaaacgactacaagcaattaaggaatttaca
gagcttggatctggttttaaaattgcaatgcgtgatttatccattcgaggtacggggaac
ttattaggatctcagcagcatggatttattgattctgttggatttgatatgtattctcag
atgttaaaagatgcaatagatgcacgtaaagcagggaaagaaattgaagaaattacccca
tttgagccagaactttcattgaaattggatgcttacatcccagatgagtacctagaggat
gaaaaacaaaaaattgaaatttataaacagtttcaaacactggatagccaagaggcaatc
ggggatttaaaagatgaattaatcgatcggttcggtgactatccgcaggaagtggaacat
ttatttaccgtaagtgaaatgaaaatgtatgcgaaaacgcagcgtgtagaatcaatttta
gagacacctaaaaagatagaaatgcttattgacgaatcacgtagtcaagaaattgatgga
tcaaagctgtttgcactagcaaatgaatatggtcgagatattggacttggtacagataac
caaaagttaaaaattggaattaagtggagtaaagattcgaaatataagcgatatgaaacg
gttacaagctttataaaacagctggataaaacaaatcgataa
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integrated database retrieval system
