Oceanobacillus iheyensis: OB0113
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Entry
OB0113 CDS
T00093
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
oih
Oceanobacillus iheyensis
Pathway
oih03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oih00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OB0113 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oih03021
]
OB0113 (rpoC)
03400 DNA repair and recombination proteins [BR:
oih03400
]
OB0113 (rpoC)
Enzymes [BR:
oih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OB0113 (rpoC)
Transcription machinery [BR:
oih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OB0113 (rpoC)
DNA repair and recombination proteins [BR:
oih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OB0113 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAC12069
JAMSTEC:
OB0113
UniProt:
Q8ETY7
LinkDB
All DBs
Position
132590..136201
Genome browser
AA seq
1203 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFAAYIVTDPGSTPLEKKQLLSEKEFRSYYDKYGNTFKAQMGAEAIRKLLQ
DIDLEKEVDALREELKSAQGQRRTRAIKRLEVMEAFRNSGNESSWMILDVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPRE
MALELFKPFIMKELVSRGLAHNIKSAKRKIERVHPDVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVDGRAIRLHPLVCTAYNADFDGDQMAVHVPLGAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERENAIGEGSYFKDTNEALIAYQTGYAHLHTRVAVQ
ASSLNNKTFTEEQNNKLLLTTVGKLIFNEILPDSFPYINEPTQLNLEEKTPENYFVDPGT
SIKEEIQSRELVKPFKKGFLGDIIAEVFKRFQITETSKMLDRMKDLGFSYSTKAGMTVGI
SDIVVLAEKQGILDEAQTKVDKVLKQFRRGLITEEERYDRVIAIWSEAKDVIQDKLMGSL
SNRNPIFMMSDSGARGNASNFTQLAGMRGLMADPAGKIIEIPIKSSFREGLTVMEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLTVSALEEGSEVIEPLI
DRLIGRTSFENVKHPETGEVIVEKNELISEDQAKTIVESGIQEVIIRSAFTCNTKHGVCQ
KCYGRNLATGSDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVITEIDGTVLEFKEVKDKQEIVVQGEVEQRSYAVPYNARMKVSIGDTVEAG
QELTEGSVDPKELLQIKGVEGVQDYLLKEVQRVYRMQGVEIGDKHVEVMVRQMLRKIRVV
SSGDTEVLPGSLLELHQFKEANHKVLMEEGEPATGRPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMPQYRNLESGLDMPESAEESSEEET
QTV
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttgttggatgtaaataattttgagtacatgaaaataggtctcgcatcacctgaaaagatt
cgttcttggtcatacggtgaagttaaaaagccggaaacgattaactatcgtacattgaag
ccagaaaaagacggtcttttctgtgagcgtatttttggaccacagaaggactgggaatgt
cattgtggtaaatacaagcgcgtccgttataaaggcgttgtttgtgatcgttgtggagta
gaagtaacaaaagcgaaagtacgtcgtgaacgaatgggacatatcgagttagccgctcct
gtgtcacacatttggtatttcaaaggaatcccgagtcgtatgggattagtattggatatg
tcaccgcgtgcgctagaagaagttatttactttgcagcatatatcgttacagatccagga
agtacaccactcgagaaaaaacaattgctttctgaaaaagaattccgttcttattatgat
aagtacggcaatacatttaaagcgcaaatgggtgcagaagcgatccgtaaacttcttcaa
gatattgatcttgaaaaagaagttgatgctttaagagaagaattgaaatctgcgcaagga
cagcgtagaacaagagcaatcaaacgtttagaagttatggaagcattccgtaattctggt
aatgaatctagctggatgattttagacgttcttccagtaattcctccagaaatacgtcca
atggttcaattggatggtggacgttttgcgacttctgatttaaatgatctatatcgtagg
gtgattaatcgtaataatcgtttgaagcgtcttcttgatttaggtgctcctagcatcatc
gttcaaaacgaaaaacgtatgctacaagaagctgtagatgcgttgattgataatggtcgt
cgtggccgtcctgttacaggaccaggaaaccgcccattaaaatctctttcccacatgttg
aaagggaagcaaggtcgtttccgtcaaaatctacttggtaagcgtgttgactactccggt
cgttccgttatcgtcgtaggacctcatttgaaaatgtatcaatgtggtttaccaagagag
atggcactagaattatttaaaccatttattatgaaagagcttgtttctagaggattagct
cataatattaaatcagcaaaacgtaagattgagcgtgtacacccagatgtatgggatgtg
ctggaagatgttattaaagaacatccagtacttctaaatcgtgcacctacacttcaccgt
ctaggaattcaggcgtttgagccaacacttgtagatgggcgtgcaattcgtctgcatcca
cttgtatgtactgcttataacgcagactttgatggtgaccaaatggcggttcacgtacca
cttggtgcggaagcacaagcagaagcgcgaatcttaatgttggctgcccaaaatattcta
aatccaaaagacggtaaaccagtagttacaccatcacaggatatggtattaggtaactat
tacctaacattggagcgcgaaaatgctatcggtgaagggtcttactttaaagatacaaac
gaagcattaattgcataccaaactggttatgctcacctgcatactcgtgttgctgttcaa
gcgtcaagcttaaataacaaaacatttacagaagagcaaaacaataaattgttactaact
actgtaggtaaattaatctttaatgagattcttccggattcattcccgtatatcaatgag
ccgacacagttgaatcttgaagaaaaaacaccagagaattactttgttgatccaggtact
tccattaaagaagagatccaaagtcgtgaacttgtcaaaccatttaaaaaaggtttctta
ggagatatcattgctgaagtcttcaaacgattccagatcacagagacttcaaaaatgctt
gaccgtatgaaagacttaggatttagttattctacgaaagcaggaatgacagttggtatt
tctgacatcgttgtacttgctgaaaaacaaggtattttagatgaagctcaaactaaagtg
gataaagtactcaagcagttccgtcgtggtttaattactgaagaagaacgttatgatcga
gtaattgctatttggtctgaggctaaagacgttattcaagataaattgatgggatccttg
agtaaccgaaaccctatctttatgatgagtgattcaggtgctcgtggtaacgcatctaac
ttcacgcagcttgctggtatgcgtggattgatggccgatccagctggtaaaatcatcgaa
ataccaattaaatcaagtttccgtgaaggcttaactgtaatggaatactttatttccaca
cacggtgcgcgtaaaggtcttgccgatacagcactgaaaacagctgactcaggttacttg
actcgtcgacttgttgatgttgcacaagacgtaatcattcgtgaagacgattgtggaaca
gatcgaggtttgactgtttcagcattagaagaaggttcggaagtaatcgaaccgctaatc
gatcgtttgattggaagaacttcttttgaaaatgtgaagcatccagaaactggagaagtg
atagttgaaaagaacgaactcatttctgaagatcaagcgaaaacaattgttgagtctggt
atacaagaagtgattattcgctctgcgtttacttgtaatacgaagcacggcgtgtgtcaa
aaatgttatggccgtaacttagcaactggttctgatgtagaggttggagaagcagtaggg
attatcgctgcacaatctatcggtgagccaggaacgcagcttacaatgcgtacattccac
acaggtggggttgctggagatgacatcacacaaggtttacctcgtatccaagagttattt
gaagcgcgaaatccgaaagggcaagcggtaataactgaaatagatggtaccgtacttgaa
tttaaagaagtaaaagataaacaagaaatagttgttcaaggtgaagtagaacaacgtagt
tacgcagtaccttataatgcaagaatgaaagtatccatcggagacactgtagaagctggt
caagagttaacagaagggtccgtagatccgaaagaactcttacaaattaaaggtgttgaa
ggggtacaggattacttgcttaaagaagtacaacgagtatatcgtatgcaaggggtagaa
attggcgataaacacgttgaagtaatggttcgccaaatgttgcgtaagattcgcgtcgta
tcttccggagatactgaagtattacctggatccttacttgaattacatcaattcaaagaa
gcgaaccataaagtgttaatggaagaaggagaaccagcaactggacgtccagttctactt
ggtattacaaaagcatcattagaaactgactccttcttatctgctgcatcattccaagaa
acaacacgtgttcttacagatgctgcaataaaaggaaaacgtgatgagctactaggtctg
aaagagaacgttattattggtaagcttgtgccagccggtaccggaatgcctcaatatcgc
aatctcgaatcaggattagatatgccagaatctgctgaagaatcttcagaagaagaaaca
caaacagtttag
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integrated database retrieval system
