Oceanobacillus iheyensis: OB1546
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Entry
OB1546 CDS
T00093
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
oih
Oceanobacillus iheyensis
Brite
KEGG Orthology (KO) [BR:
oih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oih03032
]
OB1546 (topA)
03400 DNA repair and recombination proteins [BR:
oih03400
]
OB1546 (topA)
Enzymes [BR:
oih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OB1546 (topA)
DNA replication proteins [BR:
oih03032
]
Prokaryotic type
DNA Topoisomerases
OB1546 (topA)
DNA repair and recombination proteins [BR:
oih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OB1546 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
HypA
Zn_ribbon_RPAB4
Motif
Other DBs
NCBI-ProteinID:
BAC13502
JAMSTEC:
OB1546
UniProt:
Q8EQY8
LinkDB
All DBs
Position
1588748..1590826
Genome browser
AA seq
692 aa
AA seq
DB search
MSDYLVIVESPAKAKTIERYLGKKYTVKASMGHIRDLPKSQTGVDVENNFTPKYITIRGK
GDVLKELRKAAKKAKKIYLAADPDREGEAIAWHLAYILGVDPSSNCRVVFNEITKEAIKE
SFKHPRAIDLDLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVALKMIIDREK
EIQNFKPEEYWSIDAKFQKDKEIFDGSFYGINGKKVALKNEQDVKDIKQQLNGKKFAVDK
VKKRERKKNPALPFTTSSLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKKSGGITGLITY
MRTDSTRISNTAKDEAKNYIVDNYGEKYLGKQASTKNKEGAQDAHEAIRPTSALRDPKNL
KNILSRDQFRLYKLIWERFVASQMAPAVMDTMTVHLLNNNIEFRATGSKIKFKGFMKVYV
EGNDDNKKTEDKLLPELEEGMEVDSKEIKPNQHFTQPPPRYTDARLVRTMEEIGIGRPST
YAPTLDTIQRRGYVTMDNKRFIPTELGEIKCDLMIEFFPEVVDADFTAKMEDDLDSIEEG
NIEWKQIIDSFYKDFKVRLDKAEDEMEKVEIKDEPAGIDCENCGHEMVYKMGRYGKFLAC
SNFPECRNTKPILKEIGVDCPKCEEGNVVERKSKKKRTFYGCDRFPECDFVSWDKPIARK
CPKCESMLVEKKNKKETQVQCTNCEYKEVAQT
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattatttagttatcgttgaatcacctgcaaaagcaaaaacgattgaacgatat
ttagggaaaaaatataccgtaaaggcttccatgggtcacattcgtgatttacctaaaagt
caaacgggtgtagacgttgaaaataatttcactccgaaatatataaccattcgtggtaag
ggtgatgttcttaaagaattacgaaaagcagcaaaaaaagcaaaaaaaatctatcttgct
gccgacccggatagagaaggggaagcgattgcttggcatcttgcatatattttaggtgtc
gatccatcttcaaattgtcgtgttgtttttaatgaaattaccaaagaggcaattaaagag
tcattcaaacatccacgagcaattgacctagatttagtagatgctcaacaagctagaaga
gtccttgatcgattggttggatataatattagtcctttattatggaaaaaagtgaaaaaa
ggattaagcgcaggaagagtacaatctgttgctttgaagatgattatagatcgagaaaaa
gaaatacaaaatttcaaaccagaagaatattggtctatagatgcaaaattccaaaaggat
aaagaaatttttgacggatctttttatggaataaacggaaaaaaagtagcattaaaaaac
gaacaagatgtaaaagatatcaagcaacaattaaacgggaagaaatttgcagtggataag
gttaagaaaagggaaagaaagaaaaatcctgccttacccttcactacttcatctcttcaa
caagaagctgctagaaagttaaacttccgtgcgaagaagacgatgatgattgctcaacag
ctttatgaaggtattgacctagggaaaaaatccggggggattactggtttaatcacatat
atgcgtactgattctactcgtatatccaatacagcaaaagatgaagcgaaaaactacatt
gtagataattatggtgagaagtatctaggtaagcaagcatcaacgaagaataaagaagga
gcacaagatgctcatgaggcaattcgcccaacttctgcgttaagagatccgaaaaactta
aagaatattttatcgagagatcaattccgattatataaattgatatgggaacggtttgta
gcaagtcaaatggctccggcagtaatggatacgatgaccgttcatttattaaataataat
atcgaatttcgagcaactggctcaaaaattaagtttaaaggattcatgaaagtttatgtg
gaaggtaatgatgataacaagaaaacggaagataagttattacctgaattagaagagggt
atggaagtagattcaaaagaaattaaaccgaatcagcattttacacagccacctccacga
tatacagacgcacgtcttgtgcgaacgatggaagaaataggtattggaagaccgtctact
tatgcacctacactagatacgattcaacgtaggggttatgtaacgatggataataagcgt
ttcattccgactgagcttggcgaaattaaatgtgatctcatgattgaatttttccctgaa
gtagttgacgcagatttcactgcaaaaatggaagatgatttagactctattgaagaaggg
aatatagagtggaaacaaattattgatagcttttataaagatttcaaagtaagactggat
aaggcagaagacgagatggaaaaagttgaaataaaagatgaaccagcagggattgattgt
gagaattgcggtcatgaaatggtttataagatggggagatatggtaaattcctcgcttgt
tcaaactttccggaatgtcgcaatacaaaaccgatcttaaaagaaattggtgttgattgc
ccgaaatgcgaagaaggcaatgtggttgaacgaaaatcaaagaaaaaacgaacattctat
ggttgtgatcgcttccctgaatgtgactttgtttcctgggacaaacccattgctagaaaa
tgtccaaaatgtgaatctatgttagtagagaaaaagaataaaaaagaaactcaagtacag
tgtacaaattgtgaatataaagaagtagcccagacttaa
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