Oceanobacillus iheyensis: OB3001
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Entry
OB3001 CDS
T00093
Symbol
rho
Name
(GenBank) transcriptional termination factor rho
KO
K03628
transcription termination factor Rho
Organism
oih
Oceanobacillus iheyensis
Pathway
oih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OB3001 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oih03021
]
OB3001 (rho)
03019 Messenger RNA biogenesis [BR:
oih03019
]
OB3001 (rho)
Transcription machinery [BR:
oih03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OB3001 (rho)
Messenger RNA biogenesis [BR:
oih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OB3001 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_22
AAA
ATPase_2
Spore_III_AA
NB-ARC
Mor
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BAC14957
JAMSTEC:
OB3001
UniProt:
Q8EM57
LinkDB
All DBs
Position
complement(3109026..3110306)
Genome browser
AA seq
426 aa
AA seq
DB search
METLTISNLETMTLKEIYALAKEYKVSYYAKLTKKELIFAILKAQAEKDGFLFMDGILEI
IPSEGFGFLRPINYSPSAEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVDA
VNDEDPDSSKERVHFPALTALYPNRTIQLETKTHQLSTRIMDLMTPVGFGQRGLIVAPPK
AGKTMLIKEIANSISKNHPHAKLIILLVDERPEEVTDIERSVSADVDVVSSTFDEVPESH
IKVSELVLERAMRLVEHKRDVIVLMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKR
FFGAARNIEEGGSFTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRHLADRRIFPAID
IMRSGTRKEELLVGKSHLDKMWAIRKTMQDSHDFLDRFLKRLKQSKSNEEFLQLMEEEMK
RKGISR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
gtggaaacattaacaatctctaatttagagacaatgacattaaaggaaatttatgcgttg
gcgaaggaatataaagtttcttattatgctaagctgacaaaaaaagaactaatctttgct
attttaaaagcccaagcggaaaaagatggatttctatttatggatggtatccttgaaatt
ataccttcggaaggttttggttttctacgtccaattaattattctccaagtgcagaagat
atctatatttcagcttcccaaatacgtcgatttgatttaagaaacggtgataaagtttct
ggtaaggtacgtcctcctaaagaaaatgaaagatactatggattacttcatgtcgatgca
gttaatgatgaagatcctgattcttccaaagaacgagttcatttccctgcattaacagcc
ttatatccaaatcgtacgatacaactcgagacaaaaacacatcaattatctactcgaatt
atggacttgatgactccagttggttttggacaacgtggattaattgttgctccaccaaaa
gctggtaagacaatgttaattaaagaaattgcgaacagcatctctaaaaatcatcctcac
gctaaactaattattttattagtagatgagcgaccggaagaagtgacagatattgaacgc
tctgtgtcagcggatgttgacgttgttagctcgacatttgatgaagttccggagagtcac
ataaaggtttcggaattggtattagaacgtgcaatgcgtttagttgaacataaacgtgat
gttattgtacttatggatagtattactcgactagcaagagcatataacctagtgattcct
ccaagtgggcgaacactttctggcggtattgacccagcagcatttcatcgtccaaaacgt
ttctttggcgctgcacgtaatatcgaagagggtggtagttttacaattctggcaactgct
ctcgttgatactggatctcgcatggatgatgttatctatgaagaatttaaaggtacaggg
aatatggagttgcatcttgatcgtcatcttgccgatcgacgtatattcccagcaatagat
attatgcgttcgggtacacgtaaagaagagttgttagttggaaaaagccatctcgataaa
atgtgggctattcgtaaaacaatgcaggattcccatgatttcttagatcgtttcttaaaa
cgactaaaacaatcgaaaagtaatgaagaattcctccaattaatggaagaagaaatgaaa
agaaaaggaatttctcgatag
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