Opacimonas immobilis: ACM613_03040
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Entry
ACM613_03040 CDS
T11110
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
oim Opacimonas immobilis
Pathway
oim03420
Nucleotide excision repair
oim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACM613_03040
03430 Mismatch repair
ACM613_03040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oim03400
]
ACM613_03040
Enzymes [BR:
oim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACM613_03040
DNA repair and recombination proteins [BR:
oim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACM613_03040
MMR (mismatch excision repair)
Other MMR factors
ACM613_03040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
RNase_T
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
DEDDh_C
Rv2179c-like
AAA_12
AAA_22
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
XPD36160
LinkDB
All DBs
Position
complement(649268..651988)
Genome browser
AA seq
906 aa
AA seq
DB search
MTQSVQFDSTQAKLISINSGKHFVSAPPGAGKTALLTARLNTATEHFADKDIACLTFTVR
AALEMQQRAEQVLVDRQPFIGNFHAYCMELLRKTGHPKFRHVRFATLLPEEYCKELVALA
VGDTKDVAPDYTDVPEVMFELCDAQAIASSNVYQPSWSKVMRGAYTALALLTRAEPEAQA
IGGAMLAPNMAQYAADICRITGITFGNYEHAIILLYRVFQAYAKQKRASNAIDFDDLLVH
GFALLLNEPKRLRFVQVDEVQDLNPLQWAILDTLCDETTHVFAVGDELQSIYAFLGADVA
HLHARTSAFTSHRLVNNYRAQPPLVDILNAYRAQHWQLPPIQAQQSITDPASTLLIGAAN
VVDEVDMAVRGISQILADPSRNIGMLLPTNKLIDVYCGRFLSMGLDFFRVSENDLMQQVA
LQDAFSLLRILNGSGQRVDWWSVVYRLTRFGAGSRYTRKHIIAMVNAFAQKRLPLEHVLL
GETEVFKYPYQQLLHASETGVVIFDTETTGLDFMSDKIIQLAAVKVVNGQIVAEFDEYVS
IEFGGNNSDLQQAFLDSQHVHHITLEQVQNGDTWANVLARFIAFVGECPLLAHNLKFDAE
MLKSNSVDLSLFGTLEHDLYRMLRRPCFDTLTLSRVLLPKQTSYRLESLLDAFGLDGVNS
HNALDDVKATASLFNLLLTFLPKYLASAEALLDQYAELIKPFRHAWHHLSQELIDSQWLS
SNLTLAKCIDDYLNYASRQDHWYQPESLANVQQQAQRKLYPWLDKHGLQGILSHLIDVNV
YANAKRPIEQQKAQMVGQLGTLKETDLIDPERDKLVVSTVHRAKGLEFDTVYLPCCVANQ
YPRWMPDNLPQAEREAAIAESKRLLYVALSRPKNKLIVSYHQYDGRFNQRLTDFLANSVA
HFAYQR
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgacccaatctgtccagtttgacagcacccaagccaaacttatatccattaattctggc
aagcattttgtgtccgccccccctggtgcaggcaaaactgccttgctcacggcaaggctg
aacaccgcaaccgagcactttgcggacaaggacattgcgtgtctgaccttcacggtgcgt
gcggcactagagatgcaacagcgcgcggagcaagtgctggttgatagacaaccgtttatc
ggtaattttcacgcctattgcatggaattattgcgcaaaaccgggcatcccaaatttcgt
catgtgcgctttgcaacgctattgcctgaggagtattgcaaagagcttgtggcacttgcg
gtaggcgacaccaaagatgtcgcaccagattacacggatgtgccggaggtaatgttcgag
ctgtgcgatgcccaagctatcgcgtcgagcaatgtctaccagcctagttggagcaaggtc
atgcgcggagcatatacggcactggccttgctgactcgagcggagcctgaggctcaagcc
ataggaggtgctatgctagcacccaacatggcgcagtatgctgccgatatctgtcgaatc
actggcattacctttggcaattacgagcatgcgattattttgctttatcgagtgtttcaa
gcgtatgcgaagcaaaaacgcgcatcgaatgcgatcgattttgatgatctattagtgcat
ggctttgcgttgctgttaaatgagcccaaaaggttgagatttgtgcaagtcgatgaagtg
caagatctcaatccattgcaatgggcaattttggatacgctgtgcgatgagaccacgcat
gtgtttgcggtgggcgatgaactgcaatcgatttatgcctttttgggtgcggatgttgcg
catctgcatgcgcgtaccagtgcttttacctcgcatagattagtcaacaattatcgcgct
cagcctcccctagttgatattctcaatgcttaccgagcacaacactggcaactaccgccg
attcaagctcagcaatccattactgatccggcaagtaccttgttgattggtgcagcaaat
gtggtcgatgaggtggatatggctgtgcgtggaatctctcaaattctggccgatccttca
cgcaatatcggtatgctgttaccaaccaataagctaatcgacgtgtattgtgggcgcttt
ttatcgatgggactggacttttttcgggtaagtgaaaatgatttaatgcaacaggttgcg
ttgcaagatgctttttcactgctgcgtattctaaacggttcggggcagcgcgtggattgg
tggtcggtagtatatcgtctgactcgatttggagctgggtcgcgctacacgcgcaaacac
attatcgcgatggtcaatgcgttcgcccaaaagcgcttgcccctcgaacacgtgctgctc
ggtgaaacggaagtctttaagtacccctatcaacaactgctgcacgcgagtgaaaccggc
gtggtcatctttgatactgaaactacgggcttggattttatgtctgataaaatcattcag
ctggccgcggtcaaagtggtcaacggacagatagtggctgaatttgatgagtacgtcagt
attgagtttggaggtaacaattccgatctacagcaggcctttttggacagtcagcacgtc
catcatatcacgctcgagcaggtgcaaaatggcgatacttgggcgaatgttctggcgcgg
tttattgcttttgttggtgagtgcccactcctagcacataacttaaaattcgacgccgaa
atgctcaaatccaacagtgttgacttgagtttattcggtacacttgagcatgatttgtat
cgcatgttgcgccgtccatgttttgataccctgaccttatccagagtgcttttacccaag
caaaccagctatcgtttggaatccttactcgatgcatttggcttagatggagtaaatagt
cacaatgcgttggatgatgtgaaagccaccgcatcgttatttaatctgctgctgacgttt
ttgccaaaataccttgccagtgctgaggcactgttggatcagtatgctgagcttatcaaa
ccgttccgccatgcttggcaccatctttcacaggagttgatcgattctcaatggctctcc
tcaaatctcaccttagcaaagtgcatcgatgattatcttaattacgctagtcgacaagac
cactggtatcaacccgaatccttggccaatgtgcaacaacaagcgcagcgcaagctctat
ccgtggttggataaacacggtttacaggggattttatcccatctgattgatgtgaatgtc
tatgccaatgcaaaaagaccaatcgaacaacagaaagcacaaatggtcggccaacttggg
acattaaaagaaacggatctcatcgacccagaacgcgataagttagtcgtatccaccgtg
catcgcgccaaaggtttagaatttgataccgtgtatttgccctgttgtgtggccaatcaa
tatccgcgctggatgcccgataacctccctcaagcggagcgcgaagcggcaattgctgag
agtaagcggttgttgtatgttgccttgagccgtcccaaaaacaaactcatcgtcagttat
catcaatatgacgggcgctttaaccaaagattgacggactttttagccaatagcgtggcg
cactttgcatatcagcgataa
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