Opacimonas immobilis: ACM613_03815
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Entry
ACM613_03815 CDS
T11110
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
oim Opacimonas immobilis
Pathway
oim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACM613_03815 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oim03019
]
ACM613_03815 (recQ)
03400 DNA repair and recombination proteins [BR:
oim03400
]
ACM613_03815 (recQ)
Enzymes [BR:
oim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACM613_03815 (recQ)
Messenger RNA biogenesis [BR:
oim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACM613_03815 (recQ)
DNA repair and recombination proteins [BR:
oim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACM613_03815 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
XPD36304
LinkDB
All DBs
Position
808648..810438
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AA seq
596 aa
AA seq
DB search
MLDTTPQLVDVLKQQFGYSQFRPGQQGVLDAALSGRDVIVLMPTGGGKSMCYQLPGFVLQ
GLVVVVSPLISLMQDQVAQCQGVGLRAALVNSAQAPELTAQVYQDMHRERLDILFVAPER
LLQRDFIQRLQELQIGLIAVDEAHCVSQWGHDFRQDYRRLGQLRQALPDIPMMALTATAD
LTTRADIEQQLNLRNPYIQLSSFDRPNIRYSVINKYKPLEQIKSFIRSQDGSGIIYCNSR
KRVDEVSSKLKEQGYKVAPYHAGMESFDREYSQRLFQNDDVDVVVATVAFGMGINKSNVR
YVIHYDLPRSIEGYYQETGRAGRDGLPAEAVLLFSEKDAARMQDWITQSDSPRANVELEK
FSAMHRFAEAQTCRRQILLNYFAEFSADKCGNCDVCLDPPTHFPALQVAQKVLSCVYRMR
MQGTANQVVDVLKGRGGQKAVEQGYNQLSTFGIGKDRSDEYWHNIIQQLVHLGYLRVDIV
EYGALKLTEPSKEVLQGRVSLELAVPRTSVGKPVFNATQNYDKALFAKLKALRKSIADEH
DIPPYVVFSDASLVDMAKQLPTTQFDFLQVNGVGRVKLDKYGDAFLRVIETHLTKD
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
gtgttagacaccacaccacaacttgttgatgtgctcaagcaacaattcggttacagtcaa
tttcgacctggtcagcaaggggtgttagatgccgcgctcagtggccgtgatgttattgtg
ttaatgcctacgggtggcggtaaatccatgtgttaccagcttccgggttttgtactacaa
ggcttggtagtggtggtgtcacctttgatttcgttgatgcaagatcaagttgcacaatgt
caaggagtcggtctcagagcggcgctcgtgaactccgcccaggcacctgaactaaccgct
caggtctatcaagatatgcatcgagagaggctcgatattttgtttgttgcacccgagcga
ttattgcaacgcgattttatccagcgcttacaagagttacagattggcttgattgcggta
gatgaagcgcattgtgtgtcccagtgggggcatgattttcgtcaagattatcgtcgacta
gggcaactgcgtcaggcattaccagacattcctatgatggctttgacggcaacggcggat
ttgactacccgagccgacatcgaacaacaactcaatctgcgcaatccgtatattcagcta
tccagttttgaccgacccaatattcgctattcggtcatcaacaaatataagccgctagag
caaataaaatcgttcatccgcagccaagatggcagtggcattatttattgtaatagccgc
aagcgcgtggatgaggtcagtagcaaactcaaagagcaaggctacaaagtcgctccctat
catgccgggatggagagcttcgatcgagagtactcgcaacgattgtttcaaaatgacgac
gttgatgtggtggtcgccacagtggcatttggcatggggatcaacaaatcaaacgtcagg
tatgtcattcattacgatctaccgcgcagcatcgaaggctattatcaagaaaccggtcga
gctgggcgggatggattgccggcagaggcggtcttgttgttcagtgaaaaagacgctgct
cgaatgcaagattggatcacacaatctgattcaccaagggcaaatgttgagttagaaaag
ttttctgcgatgcatcgttttgctgaagcgcaaacctgtcgcaggcagattttactcaat
tactttgctgaattcagcgccgataaatgtggaaattgtgatgtatgcttagacccgccc
acgcactttcctgccttacaagttgcgcaaaaagtcctttcatgtgtttatcgaatgcgg
atgcagggcacggccaatcaagtggtggatgtcttaaaaggccgtggcggacaaaaagcc
gttgagcaaggctacaatcaactatctacctttggcattggtaaagaccgctcagatgaa
tattggcacaacatcatccagcaactagttcatcttgggtatttgcgcgtcgatattgtt
gagtatggcgcactaaaactaaccgagccgagcaaagaagtgttgcaaggcagagtgtct
cttgaattagcggtcccacgcacgagtgtgggcaaaccggttttcaatgcgactcagaat
tacgacaaggcgttatttgccaaacttaaagccttgcgcaaaagtattgccgatgagcac
gacatcccgccatacgtggttttttccgatgcctctttggtggatatggccaaacaactg
ccgacaacacagtttgactttttacaagtcaatggggtggggcgcgtaaagttagacaag
tatggcgatgcgtttttgcgtgtgatagaaacgcatctaaccaaggactga
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