KEGG   Opacimonas immobilis: ACM613_04635
Entry
ACM613_04635      CDS       T11110                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
oim  Opacimonas immobilis
Pathway
oim03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oim00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACM613_04635 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oim03021]
    ACM613_04635 (rho)
   03019 Messenger RNA biogenesis [BR:oim03019]
    ACM613_04635 (rho)
Transcription machinery [BR:oim03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ACM613_04635 (rho)
Messenger RNA biogenesis [BR:oim03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ACM613_04635 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA_22 S1CSD-TOTE-2 AAA
Other DBs
NCBI-ProteinID: XPD36453
LinkDB
Position
988464..989729
AA seq 421 aa
MNLTELKNKPISTLVALAEEMGIENMARARKQDIIFSILKTHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDSERYFALLKIREVN
YDKPENSRNKILFENLTPLHANERLTMERGNGSTEDITARVLDLASPTGKGQRGLIVAPP
KAGKTLLLQNIAQSIAANHPECTLMVLLIDERPEEVTEMQRLVQGEVVASTFDEPANRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTSQEELQKMWILRKIVHEMTEIDAMEFLIGRLAMTKTNDEFFEAMKRQK
G
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatcttaccgaattaaaaaacaaacccatcagtacccttgttgcccttgccgaagaa
atgggcattgaaaatatggcgcgagctcgcaaacaagacattatcttttcaatccttaag
acgcatgccaaaagcggagaagatattttcggtgatggggtattagagatactgcaagat
ggctttggatttttgcgctcggctgactcttcgtatctagcgggtcctgacgatatttat
gtttcacctagtcaaattcgtcgttttaacttgcgcaccggtgatacgatttctgggaaa
attcgccccccaaaagacagtgagcgttattttgcattgctcaaaattcgcgaagtcaac
tatgacaagcctgaaaactcgcgcaataagattttgttcgaaaacttaacgccgctgcat
gctaatgagcgtttgaccatggagcgtggtaacggtagtaccgaagacattactgcacgt
gtattagatttagcatcgccgaccggtaagggtcaacgtggtctgattgttgcgccacct
aaagcgggtaaaacccttttacttcaaaatatcgcgcaatcaatcgcggctaatcatcct
gagtgcaccttaatggtactgttaattgatgagcgtccggaagaagttaccgagatgcaa
cgtctggtacaaggtgaggtggttgcatcaacgtttgatgagcctgctaatcgtcacgtt
caagtggctgaaatggttatcgaaaaagccaagcgcttagtagagcacaaaaaagacgta
gttattctgttagactcgataactcgccttgctcgtgcttacaacacagtaataccttca
tcaggtaaagtcttaacgggtggtgtggatgcgaacgcattacacaaaccaaagcgtttc
tttggtgctgctcgcaacgtcgaagagggtgggagcttgactattattgcaacggcattg
atcgataccggctctaagatggatgaagtgatttacgaagaatttaaaggtacgggtaat
atggaattacacctgaaccgtaaaatcgctgagaagcgagtcttcccggcaattgacttc
aaccgttctggtactcgccgtgaagaactactcacctctcaagaagaactgcaaaaaatg
tggattttgcgaaaaatcgtgcatgaaatgacggaaattgatgcaatggaattccttatt
ggccgcttggcgatgaccaaaacaaatgatgagttttttgaggccatgaagcgtcaaaaa
ggttaa

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