Opacimonas immobilis: ACM613_04800
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Entry
ACM613_04800 CDS
T11110
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
oim Opacimonas immobilis
Pathway
oim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACM613_04800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oim03019
]
ACM613_04800
03009 Ribosome biogenesis [BR:
oim03009
]
ACM613_04800
Enzymes [BR:
oim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACM613_04800
Messenger RNA biogenesis [BR:
oim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACM613_04800
Ribosome biogenesis [BR:
oim03009
]
Prokaryotic type
rRNA helicases
ACM613_04800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XPD36482
LinkDB
All DBs
Position
complement(1027237..1028985)
Genome browser
AA seq
582 aa
AA seq
DB search
MTDTVELTFSDLGLPEPILQALEKVGYEKPSPIQAASIPHILNGKDLLGQAQTGTGKTAA
FALPMLANIDPDENFPQLLVLAPTRELAIQVAEAFQVYASFSKKIKVLPIYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLKLDQLRFLVLDEADEMLRMGFIDDVELILSHAPE
QKQTALFSATMPPPIKKITERYLHSPEHVKITPKVTTADTIRQRYCQVAGHHKLEALTRI
LEVEEFDGVIIFVRTKTATIELSDKLSARGYDVEPLNGDIPQNARERTVDRLKKGTIDIL
VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRNGDAILFISHREKRLLNQ
IERTTKQPIEMMAIPSISDLNESRLVRFKTSIVEALEDDSIESFIPLIETIQTETEAAPE
KLMAAFAKLAQGDEPLFLNEADRPDLNARPERGDRGDRSGRERSGRERGERRQRGNSKPE
AGMQRFRIAVGHMHKVKPGNIVGAIANEANISSKNIGAIEIYDTYSTVDLPQGMPEDLQS
HLRNTRVAGQKLDIRAWSDKPPTRGKRDGGGKRDGEKRKPRK
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacagtcgaattgacttttagtgacttaggtttacctgagcccattttgcag
gcattagaaaaagtcggatatgaaaaaccatctccgatccaagcggccagtatcccgcac
attctcaacggcaaagatttgctaggacaagcacaaaccggtacgggcaaaaccgccgcg
tttgcattaccgatgcttgccaacatcgacccagatgagaacttcccacaattattagtg
ttagccccaacacgggagctcgcgattcaggtcgctgaagcattccaagtgtatgctagt
ttttccaaaaaaatcaaagtattacccatctatggcggtcagtcgtacgacaatcaaatc
cgtcaattaaaacgcggtgtacaagtcgttgtaggtactccaggtcgaatcatcgatcac
atcaaacgcaaaaccttaaaactcgaccagttgcgctttttagttctggacgaagcggat
gaaatgctccgtatgggctttattgatgatgtggaattgatcttgagccacgcaccagag
caaaaacaaaccgccttgttctccgcgaccatgccgccgccgatcaaaaagatcaccgag
cgctatttgcattcgccagaacacgtcaagatcacccctaaagtaacgactgctgatacc
attcgtcaacgttattgtcaggtagctggtcatcataaactcgaagcgttaacccgtatt
cttgaagtagaagagtttgatggcgtaattatctttgtgcgcaccaaaaccgcgaccatt
gagctgtctgataaattatctgcgaggggctatgatgtcgaaccacttaatggtgacatt
ccacaaaatgctcgcgagcgcaccgttgaccgcctcaaaaaaggcaccattgatatctta
gtggcgacagacgttgtcgcacgtggcctggatgtcgaacgcgtcagtcacgtgatcaat
tacgatatcccttacgatagcgaatcttatgtgcatcgtatcggtcgtaccggacgtgca
ggacgtaatggtgatgccattttgttcatctctcatcgtgaaaaacgcttactgaatcaa
attgagcgtacgaccaaacaacccatcgaaatgatggcgattccttctatttcagatctt
aacgaatcgcgcttggtacgtttcaaaacgagtatagtggaagcgttagaagacgattca
attgaaagctttattcccttgattgaaacgattcaaaccgaaaccgaagccgctcctgag
aagttaatggctgcatttgccaaacttgcgcaaggcgatgaaccattattcctaaatgaa
gcggaccgtccagatttgaatgcgcgtcctgaacgcggtgatcgtggcgatcgctcaggt
cgtgaacgcagtggacgtgagcgcggcgagagacgccaacgtggtaacagcaagccagaa
gcgggtatgcaacgcttccgtatcgcggttggtcatatgcacaaagtcaagccaggtaac
attgtcggcgcgattgcaaacgaagcaaacattagtagtaaaaacattggtgccattgaa
atctatgatacttactctactgttgatttgcctcaaggcatgcctgaagacttacaatca
catttgcgcaatacgcgcgtggctgggcaaaagctcgacatccgtgcttggtctgataaa
ccaccgacaagaggaaaacgtgatggcggtggtaaacgtgacggtgagaagcgtaaacct
cgcaagtaa
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