Opacimonas immobilis: ACM613_05300
Help
Entry
ACM613_05300 CDS
T11110
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
oim Opacimonas immobilis
Pathway
oim03410
Base excision repair
oim03430
Mismatch repair
oim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ACM613_05300 (recJ)
03430 Mismatch repair
ACM613_05300 (recJ)
03440 Homologous recombination
ACM613_05300 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oim03400
]
ACM613_05300 (recJ)
DNA repair and recombination proteins [BR:
oim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ACM613_05300 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ACM613_05300 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACM613_05300 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XPD36576
LinkDB
All DBs
Position
1136691..1138439
Genome browser
AA seq
582 aa
AA seq
DB search
MLHSAQIISRQITPEPEWVRTLSAIFPSHTALFARILQARNIQDPRALSNSMKDLIHYRT
LRGLNVAVQVLADAVVQDQRIVIVGDFDADGATSTALCMLALNAMGHHNVQYIVPNRFDF
GYGLSVPLVDIAHEEYQADILLTVDNGISAHEGVDRANQLGIKVIVTDHHLAGDTLPDAT
AIVNPNQPDCAFIGKNSAGVAVAFYVLSALRAELQSRQWFNPHRPMPNLAEFLDLVALGT
VADVVKLDHNNRILVYQGVARIKRQLCRPGILALLDVAGKVADKLTVSDLGFILGPRLNA
AGRLDDMSIGIECLITQDPFVARQLAEQLDQFNRERKQIEQSMRDDAETHLASMQPSHND
LPAALVLFNDTFHEGVIGIVAGRIKEQCYRPTVVFADAGDGELKGSARSIQGLHIRDALE
RVNTRHPKLIKKFGGHAMAAGLTIEASGLKQFEQAFIDVIGELGSELPKTPQVETDGALQ
ASELDLGLAKQLEQLCVWGQGCPAPMFDNVFTVVNQRIVGEKHLKLVLSLNDQTVDAIAF
NVDVSQWPNPSCQHIHAAYSLNVNEFRGNESVQCLIHTFHPV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgctgcactccgctcagattatttctcgtcaaatcacacctgaacccgaatgggtgcga
acgctttcagcaatatttccaagccatactgcactctttgctcgaattttacaggcgaga
aatattcaagatcctcgggcactatcaaatagcatgaaagacctgatccactaccgtaca
ttgcgtggtttaaacgtcgcagttcaagtcctggcggatgccgttgtgcaggatcagcgg
attgtcattgtcggtgattttgatgctgatggggcaacttcaactgccttgtgtatgctc
gcgctcaatgccatgggacatcacaatgtccagtatattgtgccaaatcgttttgatttt
ggttatggcttatctgtccccctagttgatatcgcacacgaggaatatcaagcggatata
ttgttgacagtggacaatgggatcagcgcccatgagggcgtggatagagcgaatcaactg
ggcatcaaggtcatagtgaccgatcatcacctagccggtgacacactacctgatgcaacg
gctattgtgaatccgaatcaacctgactgcgcttttattggcaaaaacagtgctggggtg
gctgtggctttttatgtgctcagtgctctgcgagctgagttacaatcccgacaatggttc
aacccgcacaggccgatgccaaacctcgcggaatttctcgacctcgttgcactcggtacg
gtagccgatgtcgttaagctagatcacaacaatcgtatcctagtttatcaaggcgttgcc
cgaattaagcggcaactctgtcgtcctgggatattggccttgttagatgtggcaggtaaa
gtggcggacaaattaacagtcagtgatttaggctttatcctaggccctcgcttaaatgcc
gcgggtagactcgatgacatgagtattggcatcgaatgtctcattacgcaagatcccttt
gtggcgcgtcagcttgccgaacaactcgatcagtttaaccgtgagcgcaaacagatagaa
caaagtatgcgagatgatgcagagactcacctagccagtatgcaacctagtcataacgat
ttaccagcggcactcgtactcttcaacgacacctttcacgagggggtcataggcatagtg
gctggtcgcatcaaagagcagtgctatcgtccaaccgtagtgtttgcagatgccggtgat
ggtgagctaaaggggtctgcacgctctatccaagggttacatattcgtgatgcgctggaa
cgagtaaatactcgtcatcccaaactcataaaaaaattcggcgggcatgccatggccgca
ggtcttaccatagaggcgagtggcttaaaacaatttgaacaagcgttcatcgacgtaata
ggcgagttgggttctgaactgcccaaaaccccacaagtggagacagatggtgccttgcag
gcctccgaattggatttggggctagctaaacagttggaacaattatgtgtctgggggcag
ggatgtcctgcacctatgtttgataatgtatttacggtggttaaccagcgaattgttggt
gaaaagcacctcaaattggttttatctctcaacgatcaaactgttgatgcgatcgctttt
aatgttgatgtcagtcaatggccgaaccccagctgtcaacacatccatgctgcatatagt
ttgaacgtgaatgaattccgtggcaatgaatcggtgcagtgtctgattcacaccttccac
ccggtgtaa
DBGET
integrated database retrieval system
