Opacimonas immobilis: ACM613_08035
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Entry
ACM613_08035 CDS
T11110
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
oim Opacimonas immobilis
Brite
KEGG Orthology (KO) [BR:
oim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oim03019
]
ACM613_08035 (hrpA)
Enzymes [BR:
oim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ACM613_08035 (hrpA)
Messenger RNA biogenesis [BR:
oim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ACM613_08035 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
nSTAND3
WHD_HA2
T2SSE
ResIII
nSTAND_NTPase5
NACHT
AAA_25
Zeta_toxin
NTPase_1
ArAE_1_C
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
XPD34861
LinkDB
All DBs
Position
1720065..1723820
Genome browser
AA seq
1251 aa
AA seq
DB search
MALTPEQQAQRQSHIPKITYPDLPVALKKDEIKEALAKHQVIIVAGETGSGKTTQLPKIC
LELGRGVAGIIAHTQPRRLAARSVADRIASELGVAVGGVVGCKIRFSDRSADNTLVKLMT
DGILLAEIQHDKLLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPELKVIITSATIDP
ERFSKHFNDAPMVTVSGRTYPVEIRYQPLFDEHSDGDGDLATGLVEAVNALRLEPLGDIL
IFLSGEREIREIETTLNKQKWRNTEVIPLYARLAASEQNKIFAPHTGQRIILATNVAETS
LTVPGIRYVIDPGYARISRYSYRTKVQRLPIEAISQASAQQRAGRCGRVADGICIRLYSE
EDFVTRPEFTDPEILRTNLASVILQMLGLGLGDIQSFPFVQAPDQRFINDGMRLLEELNA
IVKHKRTLSLTPLGKQLAKLPVDPRYARMVVAAKNSPALPVVSIIVAGLSIQDPRERPLD
KQQQADEIHREFADDDSDFITLYNIYEAFVEAKANLNNSQLRKWCKKHYLHYLRMREWQD
IIFQIQQVAKQLKFLPTGEQEPDYRDIHCALASGLLSHVAMHDKDRDFIGARNAKLMIFP
GSPLAKKRPKWMIAAELVETSRLFARYVARIEPHWLEPLAGHLSKSHLSEPYWSAKKGAA
MALEKVTLFGLPIVAQRRIVISQREPQIARELLIREALVNGFTRMKYEFLQHNQAQVDVV
VESEQKTRRRDLLVSEDVLVDFYQERIPEHVVSEASMRKWLQKLSDTSMLKFDAAMLWHN
EIGSNALLAYPDTWQQGALTLPLTYVFSPNSEDDGVTVHIPLALLNQVTPNGFEWLVPGL
RHELLVTLIKSLPKRLRRNFVPVPHYADACLAALEPTDEEGNYHALLPALADKLGKMSGM
RFAVEQWDDLALPEHLQMRYAVVDDKGKVIRAGRDLLELKDALKERIQASLEQVATPELE
QSGLVEWNFVDLPETFTHKTAGFSIQGYPGLVAESNSVAIKIFDQPHVAQASHQQGLYKL
IQLAIPSPIKYLHEKLPNKAKLGLYYNPFGKVAALIDDCIIAGIAHCVQEYKKQQKVTDI
RDKTSFAEVCECVREHINDEVLAIAQQVEAGLTCANDIKKSTKGNIPLTMLEAVGHIKSH
LDELVYPHFVSDIGAERLGDWQRYLQALRKRVDKLKVDPTKDRLHQIQIDKINAQIQKLK
NTLPKGTALPDTYYELRWMVEELRVSFFAQQLGTKYPISSKRIEQAIAQLT
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atggcattgactccagagcaacaggctcaacgacaatcacacattcctaaaataacgtat
ccagatctgccggttgcgctcaaaaaagacgaaatcaaagaagcgcttgccaagcatcaa
gtgatcattgtggctggggagaccgggtcaggtaaaaccacacaactacccaaaatctgt
ttggaacttggccgcggggttgccggtatcattgcgcatactcaacctcgtcgcttagcc
gctcgctcagtcgcagaccgcattgcttcagaattaggtgtcgctgtgggtggggttgtt
ggatgtaaaattcgctttagtgatcgttcggcggacaacaccttagttaagctgatgaca
gatgggatattactcgctgagatccaacacgacaaactcttgtctcgctatgacaccatc
atcattgacgaagcacacgaacgctcattaaatatcgatttcttgttggggtatctcaaa
cagctattacctcgccgtcctgaattaaaggtgattattacctcagctactatcgatcct
gagcggttttctaagcatttcaatgacgccccaatggtcactgtttctggtcgtacttat
ccagttgaaattcgctatcaaccgctgtttgatgaacactccgatggcgatggcgatctc
gcaacgggcttagtcgaagctgtgaatgccttgcgccttgaacctttgggcgacatattg
atatttttgagtggtgagcgcgaaatccgagaaattgaaaccacccttaacaaacaaaaa
tggcgcaataccgaagtcatacctttatacgctcgattagccgccagcgagcaaaataaa
atctttgctccgcatacagggcaacgcattatccttgccactaatgtggccgagacctct
ttgacggtaccgggtattcgctatgtaatcgatcctggttatgcgcgtatatcgcgttat
agttaccgtaccaaagtgcaacgtttgccgattgaagccatttcacaagcgtcagcgcaa
caacgagctggtcgttgtggtcgtgtcgcagatgggatctgcattcgattgtatagcgaa
gaagattttgttacccgaccagaatttaccgatcctgagatcttaagaaccaatcttgct
tcggtcattttgcaaatgctcgggcttggtttaggggatattcaatcgtttccatttgtg
caagcgcccgatcagcgttttattaatgatggcatgcgtctcttagaagagttaaacgcg
attgtcaaacacaagcgaacactctcactcacccctttgggcaaacaattagcgaaatta
cctgtcgatcctcggtatgcacgcatggttgtggccgccaaaaactcaccagcgctacct
gttgtcagtatcattgtggccggtttaagtattcaagatccccgtgaaaggcctttggat
aagcaacaacaagctgatgaaattcatcgcgagtttgcggatgatgattctgattttatt
acgttgtataacatctatgaggcatttgttgaggccaaagcgaatctcaataactcgcag
ttgcgcaaatggtgcaaaaagcactacctacattatttgaggatgcgagagtggcaggat
attattttccaaatccagcaagtcgcaaagcagctcaaatttttacccacaggcgagcaa
gagcccgattatcgagatatccattgtgctttggcttccgggttactttcgcatgttgcg
atgcatgataaagaccgagattttatcggggctcgcaatgctaagctcatgatctttccg
ggctccccattagctaaaaagcgtccaaaatggatgatcgcagcggaactcgttgaaaca
tcccgcttattcgcgcgatatgtcgcaagaatcgaacctcattggttagagccactggct
ggacacctcagtaaaagccatttatcagagccctattggtcagccaagaaaggagcggcg
atggcgcttgaaaaagtcacgctattcgggctccctattgtggcgcaacgtcgcatcgtg
atcagtcaacgcgagccacagattgcacgagaattattgattcgtgaagcgttggtcaat
ggctttacccgcatgaagtatgagttcttacaacacaatcaagcgcaagttgatgtggta
gttgaatcagaacaaaaaacccgccgacgtgatttgctcgtcagtgaagatgtgttagtc
gatttttatcaagagcggatcccagagcacgttgtatccgaagcgagtatgcgcaaatgg
ctgcagaaactctccgatacgagtatgcttaaatttgacgctgccatgctatggcacaat
gaaattgggtcaaatgcgttgctcgcttatccagacacatggcaacaaggtgctttgacc
ttgccgttaacgtatgtgttttcgcccaatagtgaagatgatggtgtgactgtccatatt
ccactggctttgcttaatcaagtcaccccaaacggctttgagtggctggtaccaggatta
cgtcatgagttattagtgaccttgattaaaagccttcctaaacggttacgccgcaatttt
gtgcctgtgccgcactatgcggatgcgtgtttagcagcgctagagcctacggatgaagag
ggtaactatcacgctctgttacccgcattagcggataaattgggcaaaatgagtggtatg
cgatttgctgtagaacagtgggacgatctcgctttacccgaacacttgcagatgcgttat
gcggtggtcgatgacaagggtaaagtaattcgtgcaggacgcgatttacttgagttaaaa
gacgctctcaaagaacgcattcaggcgtctttagagcaagttgccacacctgagctagaa
caatcggggctcgtagaatggaattttgttgacttacctgagacgtttacgcataaaacg
gctggcttttcgattcaaggatatccaggattggtggctgagtctaactcagttgcgatt
aaaatattcgatcagcctcatgtggctcaagcgtctcatcagcaagggttgtataaactg
atccaacttgctataccatcgcccataaaatacttgcatgaaaagctacccaacaaagcc
aagcttgggttgtattataatccgtttggcaaagtagcagccttgattgacgattgcatt
attgctgggattgcgcattgtgtacaggagtacaaaaaacaacagaaggtgactgacatt
cgtgacaaaacgtcatttgctgaggtttgtgagtgtgttcgagagcacattaatgatgag
gtgttggctatagcgcagcaagttgaagcgggtctgacctgtgcgaatgacatcaaaaag
tccacaaaaggtaatattccactgaccatgctcgaagccgtaggacatattaagagccat
ttggatgagcttgtctacccacactttgtatcagacattggtgctgagcggctaggggat
tggcaacgttacttgcaagctttacgcaagcgagttgacaagctgaaagtcgaccccact
aaggatcgcttgcatcaaattcaaattgataaaatcaatgcacagatccaaaaactcaaa
aatacgcttccaaaaggcaccgcgctacccgatacctattatgaactaaggtggatggta
gaagagttgcgagtgtctttttttgcgcagcaactcggcacgaaatatccgatatcaagc
aagcgcattgagcaagcgattgctcagcttacttaa
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