Opacimonas immobilis: ACM613_08110
Help
Entry
ACM613_08110 CDS
T11110
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
oim Opacimonas immobilis
Pathway
oim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACM613_08110 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oim03019
]
ACM613_08110 (rne)
03009 Ribosome biogenesis [BR:
oim03009
]
ACM613_08110 (rne)
Enzymes [BR:
oim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACM613_08110 (rne)
Messenger RNA biogenesis [BR:
oim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACM613_08110 (rne)
Ribosome biogenesis [BR:
oim03009
]
Prokaryotic type
rRNA processing factors
ACM613_08110 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XPD34873
LinkDB
All DBs
Position
complement(1737002..1739830)
Genome browser
AA seq
942 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPDDYTFEGRPNIKDAVKEGQEVIIQIDKEERGQKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERSDLKAALDQLDLPKGMGLIVRTAGVGKSAEEL
AWDLKVLLTHWQAISDVAQDRPAPFLIHQESNVIVRAIRDYLRRDVGEIVIDKKSVYEQA
LQHIKLVRPDFANRVKLYTGEVPLFSHYQIESQIESAFKREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMSVNKHQREVEN
RMKDSVSGDRARVQLSRISRFGLLEMSRQRLRPSLGESAHNVCPRCTGLGTIRGTESLAL
SVLRIIEEECIKDNTAQVEAQLPVDVATYILNEKRKAVRQLEERNKVQILVLPNVNLTTP
HFEINRRRSEDALTDISYKLELTESVEAKQESAAAAAPVKREEPALQGMAAPPQAPAPKV
ESTPSILTQFIAWLTALFAPKPAPAKKGKGRGRNQNQRRNTNRRNQARNGRNGQARTQSK
RSNKSDGEERGDHGDKERKSKSRRSQRNERNEQHDKRDRNAKTERNETKRAASEAAEAET
VSKPPRERRKRRDNRRSVRVAPVEAESNGELDSSVVVQESVTETPNVSESTQAPVTIPSA
PDTAAEQPEPVTDSAVATESVSEHTAENTENEASEHKERRTRSRRSPRHARAAGQKRKQE
QAQAELPLDDAVESDVVEPVVSEQNEDATIMAESGKQAEPSTSAEVTQAVETASVTEMVA
ESEIAVTETVTEPGIDIHPPVDAEPAKLVDAEPTKQAALPSKARASHPTALPKALESEFG
DIVINVLNDASRPTIARTARQAAIASVVNRAQAPMTRPASVD
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcatcaatgccacgcagcaagaagaactgcgtgttgcacttgttgat
ggtcaaaagctatatgatttagacatcgaaagccccggccatgaacaaaaaaaagccaac
atctacaaaggcaccatcactcgcgtagaacctagcctagaagcggcgttcgttgattat
ggcgctgagcgtcacggatttttaccactcaaagaaatcgcgagaaattacttcccagat
gactacacatttgaaggacgtccaaacatcaaggatgccgtcaaagaaggccaagaagtc
atcattcaaatcgacaaagaagaacgtggccagaaaggcgcagccctgactacgttcatt
agtttagctggttcttatttagtcctgatgcctaataacccacgggcgggtggtatctct
cgtcgtattgaaggcgatgagcgctcagacttaaaagctgccttagatcaacttgaccta
cccaaaggtatgggactgattgtccgcaccgcaggtgtgggtaaatcagctgaagagttg
gcatgggatctcaaggtattattaacccattggcaggcaatatctgatgttgctcaagac
cgccctgcaccctttttgattcaccaggaatcaaacgtcattgtacgggctattcgcgat
tatttgcgtcgtgatgtgggtgagattgtcatcgacaagaagtctgtctacgagcaggcc
ttgcagcatattaaattggtgcgtcctgattttgctaatcgcgtcaaactatacactggt
gaagtgccattatttagccactaccaaattgaaagccaaatcgaatcagctttcaaacgc
gaagtacgtctaccctctggtgggtctatcgttattgatccaacagaagcattaacctca
atcgatattaactcagcgcgggcgaccaaaggtggcgatatcgaagaaacagcgtttaat
accaacttagaagccgccgaagagatcgctagacaactgcgcttacgtgatttaggtggt
cttgtggtgattgacttcattgacatgtctgtgaataagcatcagcgtgaagtcgaaaat
cgcatgaaagactcagtcagtggtgaccgcgcgcgtgtgcaattaagccgcatttcacgt
tttggcttactggagatgtcacgtcaacgcttgcgtccatcattaggtgagtcggcgcat
aatgtctgccctcgttgtactggtctgggtacgattcgaggtacagagtcattagcgctt
tccgttttgcgcatcattgaagaagaatgcatcaaggacaacacggcgcaagttgaagcg
caattaccggtcgatgttgcaacgtatattttgaatgaaaaacgtaaagccgtacgtcaa
ctagaagagcgtaataaagttcaaatcttggtactgccaaatgtgaacttgaccactcca
cacttcgagatcaatcgtcgtcgatcagaagatgcattaactgacatcagttacaaactt
gaattaaccgaatcggttgaagcaaaacaagagtctgctgcggcagccgcaccagttaaa
cgtgaagaacccgctttgcaaggaatggctgcgccaccacaagcacccgcaccaaaagtt
gagagtaccccaagcatattaactcaatttattgcttggttaaccgctttgttcgcgccg
aaaccagctcctgccaagaaaggcaaaggtcgtggccgtaaccagaatcaacgtcgcaat
accaaccgtcgcaatcaagcgcgcaatggacgtaatggtcaagcgcgcacgcaaagcaaa
cgctctaacaagagtgatggggaagagcgtggggatcatggagataaagaacgcaagtct
aaatcacgtcgttctcagcgtaacgaacgcaacgaacagcatgacaaaagagaccgcaat
gcaaaaacagagcgcaatgagacaaaacgtgcagccagtgaagctgctgaagcggaaaca
gtcagcaagccaccacgtgaacgtcgcaagcgtcgcgataatcgcaggtcggttcgtgta
gcgccagttgaagcagaaagtaatggtgaactagattcatcagtggttgtgcaagaaagc
gttaccgagactcctaacgtatctgagtctactcaagcacctgttacaataccttcagcg
ccggatacagcggcagagcaacctgaaccagtcactgattcagctgttgcaacggagtcg
gtgtcagagcatactgctgaaaacactgagaatgaagcctctgaacacaaagagcgtcgt
actcgctctcgccgctcaccacggcatgcacgtgcagcggggcaaaaacgcaaacaagaa
caggcgcaagcagaactgccactggacgatgcggttgaatcagacgttgttgagccagtc
gtgagtgaacaaaacgaagatgcgactattatggccgaatctggtaagcaagctgaaccg
tcgacctcggctgaagttacccaagcagtggaaacggcgagtgtcacggaaatggtcgct
gaaagcgagattgccgttactgagacagtcactgagccgggtattgatattcaccccccg
gtggatgctgaaccagctaagttagtggatgcagaaccgactaaacaagctgcattacca
agtaaagctcgagcatcacatcctactgctttaccaaaagcgttagaaagtgagtttggc
gatatcgttatcaacgtattaaatgatgcatctcgtccgactattgctcgcactgcacgc
caagcagcgattgcctcagtcgtgaatcgtgcacaagctccaatgactagaccagcaagt
gttgactag
DBGET
integrated database retrieval system
