Opacimonas immobilis: ACM613_10000
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Entry
ACM613_10000 CDS
T11110
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
oim Opacimonas immobilis
Pathway
oim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACM613_10000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oim03019
]
ACM613_10000
Enzymes [BR:
oim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACM613_10000
Messenger RNA biogenesis [BR:
oim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACM613_10000
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
ERCC3_RAD25_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
XPD35227
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All DBs
Position
2141671..2142930
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AA seq
419 aa
AA seq
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MAEASFTTMGLCAPILRALTEHNYTSPTPIQLEGIPAVLTKKDVMAAAQTGTGKTAAFTL
PILHLLYEAQLKQPKHVTNNHVRTLILAPTRELASQIYDNVVKYSQYMDVRVNVVFGGVK
INPQMMKIRRGTDILIATPGRLLDLVQKNAVKFGQLNTLVLDEADRMLDMGFIHDIKRVI
TLLPQKRQTLMFSATFSDDIRQLAKRLVKQPIEITVTPPNSTVERIEQVLYTVNQSDKTK
LLIHLIKEYNFHHVLVFSRTKHGANRLTTTLIKKGIPAAAIHGNKSQNVRTRALNDFKNN
DIQVLVATDIAARGIDVAGLPYVINFDLPDVSEDYVHRIGRTGRAGESGLAISLVTPEQA
PALAGIEHLIQLHIPRKNESGFVCSQAIPQTNLQKKAKKPKKPKKPKPPQSAPSQARRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagcttctttcactacaatgggtttatgtgcgccaatactgcgcgcgttaacc
gaacacaattatacctctccgacccccattcaacttgagggtattccggcggtattgact
aaaaaggacgtgatggcagcggcgcaaaccggcaccggcaagacggctgcttttaccttg
ccgatattacatttactttacgaagcacaactcaaacaacccaagcacgtaaccaataac
catgtgcgtactttgatccttgctccgacaagagaacttgcctcacaaatttacgacaat
gttgtcaaatacagtcaatacatggatgttcgtgtgaatgtcgtcttcggcggggtcaaa
atcaatccacaaatgatgaaaatcagacgcggtacggatattttaattgctacacctggt
cgtttgttggatttggtgcaaaaaaacgccgtaaaatttggacaactgaacaccctggtt
ttagatgaagccgaccggatgctcgatatgggcttcatccatgatattaagcgcgtgatt
acattactgccacaaaagcgccagaccttgatgttctcggcaacgttttcagacgatata
cgccaattagccaaacgtttagtcaaacaacccattgaaattacggtcaccccgccgaac
tcaacggtggagcggattgagcaagtattatatacagtcaaccaatctgacaagactaag
ttactcattcacttgatcaaagaatataactttcatcatgtgttggtcttttctcgaacc
aaacacggtgctaaccgtcttacaacgactctaatcaaaaagggcatccctgcagcggcc
attcatggcaacaaatcgcagaatgtgcgcacccgagcgctgaatgattttaaaaataat
gacattcaagttttggttgcaaccgatattgctgcgcgtggtattgatgtcgccggctta
ccttatgtgatcaactttgatttaccagatgtctcagaagactatgtgcaccgtattgga
cgcaccgggcgtgctggagagtcaggtctagccatcagtttggtgacgcccgaacaagca
ccggcattggctgggatagagcatttaatccaattacatatccctcgaaaaaacgagtcg
gggtttgtctgtagtcaagcaataccgcagactaatttacagaaaaaagcgaagaaaccc
aaaaaacccaagaagcccaaaccaccgcaaagcgcgccaagtcaagcaaggagacgttga
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