KEGG   Oxyura jamaicensis (ruddy duck): 118155989
Entry
118155989         CDS       T11549                                 
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
  KO
K11367  chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
oja  Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:oja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oja03021]
    118155989 (CHD1)
   03036 Chromosome and associated proteins [BR:oja03036]
    118155989 (CHD1)
Transcription machinery [BR:oja03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     118155989 (CHD1)
Chromosome and associated proteins [BR:oja03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     118155989 (CHD1)
    SLIK complex
     118155989 (CHD1)
SSDB
Other DBs
NCBI-GeneID: 118155989
NCBI-ProteinID: XP_035165588
LinkDB
Position
Z:complement(join(55911197..55911560,55911764..55911974,55913010..55913067,55914013..55914109,55915603..55915781,55917100..55917240,55917655..55917918,55920096..55920236,55920592..55920714,55921723..55921873,55922657..55922795,55923200..55923330,55924033..55924074,55925472..55925632,55925795..55925971,55926917..55927012,55927101..55927197,55927468..55927616,55928212..55928361,55929664..55929735,55930148..55930300,55931593..55931755,55932061..55932249,55933089..55933279,55933868..55933957,55934592..55934808,55935352..55935479,55936315..55936493,55936720..55936820,55937670..55937895,55939374..55939645,55939931..55940080,55942184..55942251,55943504..55943608,55945421..55945625,55961334..55961386))
AA seq 1810 aa
MNGHSDEESVRNSSGESSRSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGS
QSESESDTSREKKQVQAKPPKVDGTEFWKSSPSILAVQRSAVLKKQQQQQKAVSSDSVSE
EESSSSEDSADDSSSETKKKKHKDEDWQMSGSGSVSGTGSDSESEEDRDKSSCEESESDY
EPKNKVKSRKPPSRIKPKSGKKSAVQKKRQLDSSEEEEEDDDEDYDKRGSRRQATVNISY
KEAEETKTDSDDLLEVCGEDVPQTEEDEFETIEKFMDSRIGRKGATGAATTIYAVEADGD
PNAGFEKSKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRW
LKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECS
WEDGALIAKKFQTRIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGQESLELR
DYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTL
TSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSF
LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP
EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ
KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH
LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL
RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNK
EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVA
NFSNMDEDDIELEPERNSRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQISF
NGSEGRRSRSRRYSGSDSDSITERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFG
GPLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSCGQERAGGRLGKVKGPTF
RISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLL
VGIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEA
QRLAGAGNSKRRKTRTKKNKLIKASKIKEEIKSDSSPQPSEKSDEDDEEEDNKDEIVSVK
HLHKKIKAEKENEEKPEPDIGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKEKDIK
EKRENKVKESTQKEKEVKEEKVNEIKSENKEKNKKNQLLDTPVHITATSEPVPISEESEE
LDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNP
EQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNISSNVNTHVIRNPD
VERLKETTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDAYKKSDSRKRPYSAFSNGKDHR
DWDHYKQDSRYYSDSKHRKLDDHRSRDHRSNLEGNLKDSRPHSDHRSHSDHRIHSDHRSA
SEYSHHKSSRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDHKST
PEHTWSSRKT
NT seq 5433 nt   +upstreamnt  +downstreamnt
atgaatgggcacagtgatgaagaaagtgtaagaaacagcagtggagagtcaagtcgatca
gatgatgattctgggtcagcatcaggttctggatctggttcaagctctggaagcagtagc
gatggaagtagcagccagtcagggagcagtgactctgactctggttcagagtcaggcagt
caatcagaatcggagtccgacacatctagagagaagaaacaagtacaagctaaaccacca
aaagttgatggaactgagttttggaagtccagtccaagtatacttgctgtacagcgatca
gcagtgctcaagaagcaacagcaacaacaaaaggcagtatcatcagacagtgtttctgaa
gaggagtcatccagtagtgaagattctgccgatgactcatccagtgaaaccaagaagaaa
aagcataaagacgaagactggcaaatgtcagggtcaggatcagtatcaggaactggttct
gattctgaatcagaagaagatagggataaaagcagttgtgaagaaagtgaatctgactat
gagccaaaaaacaaggtcaaaagccggaaacctccaagcagaattaaaccaaaaagtggg
aaaaagagtgcagtacagaaaaagaggcaacttgattcatctgaggaggaggaggaggat
gatgatgaggattatgataagagaggatctcgtcgccaggcaacagtcaacattagttac
aaagaagctgaagaaaccaagacagattctgatgatttgctggaagtttgtggagaagat
gtcccacaaactgaagaagatgaatttgaaactatagaaaagtttatggatagtcgaatt
ggccgaaaaggagccactggtgccgcaaccaccatctatgcagttgaggcagatggtgac
ccaaatgctgggtttgaaaagtcaaaggagccaggagaaatacagtatcttattaaatgg
aaaggctggtcacacatccataacacttgggaaactgaggaaacattgaagcaacaaaat
gttaaaggaatgaagaaactggacaactacaagaaaaaagatcaggaaacaaaacgatgg
ctgaaaaatgcttctccagaagacgtggaatattataactgccagcaggagcttacagat
gacctacataaacagtatcagatagtggaaagaataattgctcattcaaatcaaaagtca
gcagctggttatccagactactattgcaaatggcagggtctaccttattcagaatgtagc
tgggaagatggtgctctcattgccaaaaagtttcagacacgcattgatgagtattttagc
agaaatcaatccaaaaccactccttttaaggactgcaaggttctaaaacagagaccaaga
tttgttgcactaaagaagcagccatcttacattggaggacaggaaagtttggagttaaga
gattatcagttaaatggattgaattggcttgctcattcatggtgcaaagggaatagttgt
attcttgcagatgaaatgggtctgggtaaaacaatacaaacaatttcttttctgaactac
ctgtttcatgaacatcaactgtatgggcctttcctgctggttgtgccactttctactttg
acatcttggcaaagagagattcaaacttgggcgcctcagatgaatgctgtagtttactta
ggagatataaccagcagaaatatgataagaactcatgaatggatgcatccacagaccaaa
cgactaaagtttaacatacttctgacaacatatgaaattttgctgaaggataagtcattc
cttggcggtctgaattgggcgttcataggggttgacgaagctcatcgtttaaaaaatgat
gactctcttctgtacaagactttaatagactttaagtctaaccatcgacttcttattact
ggaactcctctgcaaaactccctcaaagaactttggtctttgttgcacttcatcatgcca
gaaaaattttcctcctgggaagattttgaagaggagcatggcaaaggaagagagtatggt
tatgcaagtcttcacaaagagcttgaaccatttttgctgagaagagttaaaaaagatgta
gaaaagtctttacctgcaaaagttgagcaaattctgaggatggaaatgagtgcattgcag
aaacaatattacaagtggattttaacaaggaattataaagccctcagtaaaggttcaaaa
ggcagtacctctggctttctgaacattatgatggaactcaaaaagtgttgtaaccattgc
tacctcattaaaccaccagatgataatgaattctataacaaacaggaggccttacagcat
ttaatacgtagcagcgggaaactaatccttcttgacaagctactgattcgtctgagagaa
cgtggcaacagagttctaattttctctcagatggtgaggatgctggacatcctagcagag
tacctaaagtatcgtcaatttcccttccagagacttgatggatcaataaaaggggaattg
aggaaacaagcactggatcattttaacgcagaaggatcagaggacttttgctttttactg
tctaccagagctggaggattaggtataaacttggcatctgctgacactgtagttatattt
gattctgactggaatccacagaatgatctgcaagcacaagctagagctcataggattgga
cagaagaaacaggttaatatttatcgtctagtcacaaaaggatcagtagaagaagatatt
cttgaaagagccaagaagaagatggtgttagatcatctagtaattcagagaatggacact
acaggaaaaactgtactacatacaggttctactccttcaagctcaacaccttttaataaa
gaagaattatcagcaattttaaagtttggtgcagaggaactttttaaagaacctgaaggg
gaagaacaagagccccaggaaatggatatagacgaaatcttgaagagggctgaaactcgg
gaaaatgagccaggtccattaactgtaggagatgagttgctttcacagttcaaggtggcc
aacttttccaatatggatgaagacgatattgagttggaaccagaaagaaactcaagaaac
tgggaagaaatcatcccggaagtccagaggcgaagaatagaagaagaggaaagacaaaaa
gaacttgaagaaatatatatgctcccaaggatgagaaactgtgcaaaacagatcagcttt
aatggaagtgaaggaagacgcagtaggagcagaagatattctggatctgatagtgactcc
atcacggagagaaaacgtccaaaaaagcgtggaagaccacgaactattcctcgagaaaat
attaaaggatttagtgatgcagagatcaggcggtttatcaagagttacaagaaatttggt
ggccctcttgaaaggttagatgctgtagctagggatgctgagctagttgataaatctgaa
acagaccttagacgtctgggagagcttgtgcataatggatgcattaaggctttaaaggac
aattcatgtggacaagaaagagcaggaggtagacttgggaaagttaaaggcccaacattt
cgaatctcaggagtgcaggtgaatgcaaagctagtcatctctcatgaagaagagttggca
ccattgcacaaatccattccttcggatccagaagaaaggaaaagatatgtaatcccatgc
cacaccaaggctgctcattttgatatagactggggtaaagaagatgattccaatctgtta
gttggcatctatgaatatggttatggcagctgggaaatgataaaaatggatcctgatctc
agtttgacacagaagattttgcctgatgatccagataagaaaccccaggcaaagcagtta
cagacccgtgcagactacctcataaaattactgaataaagaccttgcaagaaaggaagca
caaaggcttgctggtgcaggcaattcaaagaggaggaaaacaagaactaagaagaataag
ttgataaaggcttcaaaaataaaagaagaaataaaaagtgattcatcaccacagccctca
gaaaaatctgatgaagatgatgaggaggaggataacaaggatgagattgtttcagtgaaa
catctacataaaaaaataaaagcagaaaaagaaaatgaagaaaagcctgagccagatatt
ggtataaagaaggaagctgaagaaaaaagagagacaaaagaaaaggaaaataagagggat
ttgaaaagggagaaaaaagaaaaagaggataagaaagaattaaaagaaaaagatattaaa
gaaaagagagaaaacaaagtaaaagaatccacacagaaagaaaaagaagtaaaggaagag
aaggtaaatgaaatcaaatcagaaaataaagaaaaaaataaaaaaaatcaattgttggat
actccagttcacattactgcaacgagtgaaccagttcctatatcagaagaatctgaagaa
ctagatcagaagacgtttagtgtgtgcaaagaaagaatgaggcctgtcaaagcagcattg
aaacagctggatagaccagagaaaggcctttctgaaagggagcagctggaacatactaga
cagtgtctaatcaaaattggggatcacattactgaatgcctaaaggagtatacaaatccg
gaacaaattaaacagtggaggaaaaatttgtggatttttgtctctaagtttacagaattt
gatgccagaaagttgcacaaactgtataagcatgcaatcaaaaagcgccaagagtctcag
caacacaatgaccagaatattagcagcaatgtgaatacacatgtaatcagaaatccagat
gtagaaagactgaaagagactacaaatcatgatgacagtagcagagacagttactcttct
gatagacatctgtcacaataccatgatcatcacaaagacaggcatcagggagatgcttac
aagaaaagtgactctaggaaaaggccatattcagccttcagcaatggaaaagatcacaga
gattgggatcactacaaacaagacagcagatactacagtgatagtaaacatagaaagtta
gatgaccacaggagcagagaccacaggtcaaacctggaaggaaatttaaaagacagccgg
cctcattcagatcaccgttcccattcagaccacaggatacattcagatcaccgttctgct
tcagagtacagccatcataaatcttccagagattatagataccactcagactggcaaatg
gaccacagagcttctggtagtggcccaaggtcaccactagatcagaggtctccttatggt
tcaagatctcccctgggacacaggtctccatttgaacactcatcagatcacaaaagtaca
cctgaacatacatggagtagccggaagacataa

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