KEGG   Oxyura jamaicensis (ruddy duck): 118156112
Entry
118156112         CDS       T11549                                 
Symbol
TMC1
Name
(RefSeq) transmembrane channel-like protein 1
  KO
K21988  transmembrane channel-like protein
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja04519  Cadherin signaling
Brite
KEGG Orthology (KO) [BR:oja00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04519 Cadherin signaling
    118156112 (TMC1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:oja02000]
    118156112 (TMC1)
   03037 Cilium and associated proteins [BR:oja03037]
    118156112 (TMC1)
Transporters [BR:oja02000]
 Other transporters
  Pores ion channels [TC:1]
   118156112 (TMC1)
Cilium and associated proteins [BR:oja03037]
 Other cilia and associated proteins
  Stereociliary proteins
   118156112 (TMC1)
SSDB
Motif
Pfam: TMC Piezo_TM1-24 COX16
Other DBs
NCBI-GeneID: 118156112
NCBI-ProteinID: XP_035165798
LinkDB
Position
Z:complement(join(38812706..38812974,38813920..38814055,38814152..38814230,38817640..38817765,38819248..38819487,38821016..38821083,38832234..38832362,38833906..38834058,38834291..38834470,38839449..38839643,38841735..38841879,38846520..38846662,38850988..38851086,38852294..38852400,38857129..38857210,38858468..38858558,38867632..38867772,38877115..38877487,38877609..38877674,38878750..38878828))
AA seq 966 aa
MSQAVSHIYKLKHGYLKESLLAPGFSGGSDVDNEEGSAAENEENVKGTGKEVKRVTPRTR
RGHTRGRARRGGEEDGDDEDEPRRAGHRRHRNRRGRGRAGGNEGSDSDGDPAKAKKNKAN
QKSKEEGEEEEDCKGDKSGKGKNEKKQDKKSDKKGKKEKANKKKKDKKKSGSGSDSDSEE
EPITEEELAKLKEEVEEKKKLIATLRNKPWKMKKKLAVLKEAQLFVEKFEGALGKGKGKK
FYAYKVMMTKKWMKFQRDFENFKTACIPWEMKIKEIESHFGSSVASYFIFLRWMYGINMI
LFGLTFGLVMVPEALMGKPYGSLPRKTVPRAEEASAMNFATLWDFSGFAQYSVLFYGYYN
NQRTIGWLKFRMPLSYFLVGVGTIGYSFMIVIRTMARNANEDGGGDDTSFNFSWKMFTSW
DYLIGNPETADNKFASITTSFKEAIVEEQESRKEENIHLTRFLRVLANFLALCTLAGSGY
LIFFVVRRSQKFALEGLENYGWWERNEVNMVMSLLGMFCPTLFDVISSLENYHPRIALRW
QLGRIFALFLGNLYTFIIALMDEINLKLEEEKIVKYNMTIWEASLYNGTIPENSTAPPIH
VDPADVPRGPCWETMVGQEFVRLTVSDTMTTYITILIGDFLRAVFVRFFNYCWCWDLEYG
FPSYSEFDISGNVLGLIFNQGMIWMGSFYAPCLPAINVFRLHTSMYLQCWAVMCCNVPQE
RVFKASRSNNFYMAMLLFILFLSTLPAVYTIVSIPPSFDCGPFSGKTRMFEVISETLEHD
FPSWFGKVFGYASNPGLILPFILLMVLSIYYLNATSKSYKEANLELKKKLQSQAEENKRR
NKQKAQKSNEQEENPFETEPPQTKQKGSEQDESSPNQDNKQGQSGNDAKKMDQPQEAGSS
QTLQNPGSAPNGHHPMQNRGGNLLPPPIAVTRPPGPRGFATPGYPPGHPHFPGAQPGMPR
GPPIYR
NT seq 2901 nt   +upstreamnt  +downstreamnt
atgtctcaagcggtgtcccacatctacaaactgaaacacggatacctgaaagagagccta
ttagctcctggcttctcaggtggcagtgatgttgacaatgaagaaggcagcgcagctgag
aatgaagaaaatgtcaaaggaacaggtaaagaggtgaagagagtaacaccgagaaccaga
aggggacatactagagggagagccagacgtggtggtgaggaggatggagacgatgaagat
gaaccaaggagagctggacatcgcaggcacagaaaccggagaggacggggacgagcaggt
ggaaatgagggcagtgattctgatggggatcctgcaaaagcgaagaagaacaaggcaaat
caaaaatccaaggaagaaggtgaagaagaagaagattgtaaaggggataaaagtgggaaa
ggcaaaaatgagaagaaacaagacaaaaagtctgataagaaagggaaaaaagagaaagcc
aacaagaagaaaaaagacaaaaagaaatcaggatctggctctgattctgactctgaggag
gagccaattacagaggaagaattggccaagctgaaagaagaggtagaagaaaaaaagaag
ctaattgcaacattacgaaacaagccatggaagatgaaaaagaagttggcagtcctgaag
gaagcccagctttttgttgaaaagtttgaaggtgctcttggaaaaggaaaaggaaaaaag
ttctatgcatacaaagtgatgatgaccaagaaatggatgaaatttcaaagagattttgag
aattttaagacagcttgcataccctgggaaatgaaaattaaggagattgagagtcacttt
ggttcatcagtagcctcttacttcatatttttacgctggatgtatggaataaacatgatt
ctctttggactgacctttggacttgtaatggtgcccgaggctttgatggggaagccatat
ggctctctacctagaaaaactgtcccaagagctgaagaagccagtgctatgaactttgct
actctctgggattttagtggctttgcacagtattctgtgctcttttacggttattacaac
aaccagaggacaattggatggctcaagttcaggatgcctctttcctatttccttgttgga
gttgggactattggctacagctttatgattgtaattcgaacaatggcaaggaatgcaaat
gaagatggtggtggagatgacactagttttaatttcagctggaaaatgttcacaagctgg
gactacctgattggcaatcctgagacagcagataataagtttgcttcaatcactacaagc
tttaaggaagctattgtggaggagcaggagagccgaaaagaggaaaacattcacttgact
cgattcctgagagttcttgctaacttcttagccctatgcacacttgctgggagtggctac
ctcatcttttttgttgtgagaagatcacagaaatttgccctggaaggtctggagaactac
gggtggtgggaaagaaatgaagtgaacatggtcatgtcacttttaggaatgttctgtcca
actttatttgatgtaataagttctctggaaaactaccaccctcgaatagctctaagatgg
cagctgggacgcatctttgctctttttcttggcaacctctacactttcattattgcccta
atggatgaaatcaatctcaagttagaggaagagaagattgtcaagtataacatgacaata
tgggaagccagtctatacaatggtactattccagaaaattcaactgctcctccaatacat
gtagaccctgcagatgtccccagaggtccatgttgggaaacaatggtaggccaggaattt
gtgcggctgacagtctctgacacgatgacaacttatatcacaattctaattggcgatttc
ttgagagctgtctttgttaggtttttcaattactgctggtgctgggacttggagtatgga
tttccatcatattcagagtttgatataagtgggaatgtactgggactgatctttaaccaa
ggcatgatctggatggggtctttttacgctccatgtcttccagcaattaatgtgttccgc
ctccacacttcaatgtacctgcagtgctgggcagtgatgtgctgcaatgtcccccaggag
agggtattcaaagcttccagatcaaacaacttctacatggctatgttgcttttcattctc
tttctctccacgctacccgctgtgtacaccatagtctccattccaccatcttttgactgt
ggtcctttcagtgggaaaactagaatgttcgaagtcatatcagaaactctggagcatgac
ttcccttcttggtttgggaaggtatttggctatgcctcaaaccctggacttatcctacct
tttatattactgatggtcttgagtatttattatctgaatgctacatccaaatcctacaag
gaagctaacttggaacttaaaaagaagctacaaagtcaagcagaagaaaataaaagaaga
aataaacaaaaggcacaaaagtcaaatgagcaagaggaaaatccatttgagacagaacca
ccacagacaaagcaaaaaggaagcgagcaagatgaatcttctccaaatcaagataacaag
caaggacagagtggcaatgatgcaaagaaaatggatcagccacaagaagccggttcctct
cagacactccagaatccaggctctgccccaaatggccaccatccaatgcagaacagagga
ggaaaccttcttcccccacccattgctgtgacacggccaccaggacctcgggggtttgca
acaccaggctatccacctggacacccacactttccaggggcccagccaggaatgcccagg
ggcccgccaatctacagataa

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