KEGG   Oxyura jamaicensis (ruddy duck): 118156679
Entry
118156679         CDS       T11549                                 
Symbol
SMC5
Name
(RefSeq) structural maintenance of chromosomes protein 5 isoform X1
  KO
K22803  structural maintenance of chromosomes protein 5
Organism
oja  Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:oja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oja03400]
    118156679 (SMC5)
DNA repair and recombination proteins [BR:oja03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    SMC5-SMC6 complex
     118156679 (SMC5)
SSDB
Motif
Pfam: SMC_N AAA_23 AAA_15 AAA_21 HAP1_N COG3_N FtsK_SpoIIIE ZapG-like AAA_29 AAA_25 HVO_A0114 AAA_13
Other DBs
NCBI-GeneID: 118156679
NCBI-ProteinID: XP_035166731
LinkDB
Position
Z:complement(join(39745995..39746135,39749006..39749101,39749193..39749372,39755400..39755519,39755725..39755829,39756228..39756323,39757008..39757133,39762571..39762693,39765724..39765847,39768239..39768408,39768544..39768717,39772188..39772320,39772521..39772615,39774027..39774140,39775467..39775621,39776592..39776847,39777779..39777850,39783738..39783899,39785644..39785784,39787357..39787491,39788772..39788934,39790273..39790325,39791288..39791429,39793352..39793488))
AA seq 1070 aa
MAAVAVRGGWGAGASQLGADGAPRAARQRPRFVEGSIVRIFMENFLTYDICEVRPGPNLN
VIVGANGTGKSSIVCAICLGLAGKPSFIGRADKVGLFVKQGCLKGVVEIELSKTPDNIII
TREIQVVNNTSTWFINKKPATLKTVEEQIAALNIQVDNLCQFLPQDRVGEFARLSKVELL
EATEKSIGPPEMYKFHCELKNFREKERELENLCKEKANSLEKMKQRVERYKQDVKRYHER
KRHLDVIEMLERKRPWVEYETVRQQHEEVKQIRDQAREELKNLKEMQSPLTKKMQEIEES
YKSLDRKIRCMAGEIKEASQKCKQKQDDLEMKDKQIEEINQAFRMKKDEEMDRRKKIISA
HKMIEEWNDELSTVNDCENLQPQIDAVNKELKHLQGERANIESDISDVKTEKNNQEREKR
RIIDRIGQLNNIMSMKEETLKGKFQDTHSALMWLRKNKDKFKKTVCEPMMLVINLKDSRH
AKYIENHISANDMKAFVFESQEDMELFLVETRDHQKLRVNAVCAPAVSCAGSLPSRPIEE
LHQYGFFSYLRELFDAPLPVMSYLCSQYRIHDVPVGTEKTRNMIEKVIQETKLKQVYTAE
EKYTVKVSAYTNLTFSTNMSLRAAQFLTNSVDTDERQQLEKQQQGINCTLQSLDTQLTTL
FERQKHLERRDNELRQQKKELLERGNRRRQLESKIAVKYDSIKQLEQDFINLEEESQQAN
VKIKEINIQKARLVSELMHLIKHCVSLNILKTDLVLQSTAVDAEKNRLESEYKAASTQLR
ALEQNFRELDEKKRVLTENCRELMKKARQMCKLSPDQHLPKEFQTAFQALPNTLEEIDAV
LNDEKSRASCFTGLNASIVEEYSKQTQEIQQLTEELEEKKNELDNYKQNISQIKERWLNP
LKRLIEKINEKFSNFFSSMQCVGEVDLHVENEEEYDKYGIRIRVKFHSSTELHELTPYHQ
SGGEKSVSTMLYLMALQELNRCPFRVVDEINQGMDPVNERRVFEMVVKTACKENTSQYFL
ITPKLLQNLTYNDKMTVLFVYNGPYMLEANKWNLKSFCRQRRRLGRMDEQ
NT seq 3213 nt   +upstreamnt  +downstreamnt
atggcggcggtggcggtgagggggggctggggcgcgggcgcttcgcagctgggcgccgat
ggagcgccgcgggccgccaggcagcggccccgcttcgtggagggctccatcgtcaggatc
ttcatggagaacttcctaacttatgacatctgtgaagtacgtccaggacccaacttgaac
gtgattgtaggtgctaatgggacgggaaagtcaagcattgtttgtgccatctgtctggga
ctagctggaaaaccttctttcataggacgagctgacaaggttggtctctttgtaaagcag
gggtgcctgaaaggtgtggtagaaattgaactgtctaagacacctgacaatatcattatc
acacgtgaaattcaagtggtaaacaacacgtcaacatggtttatcaacaaaaaaccagca
actctgaaaacagtagaagaacagatcgcagccttaaacatccaggtggacaacttgtgc
cagtttcttcctcaggacagagttggagaatttgcaagactgagtaaggttgaattgctt
gaagccaccgaaaaatccattggtcctccagaaatgtacaaattccactgtgaactgaaa
aacttcagagaaaaagaaagagaactagagaatttgtgcaaagagaaagctaactcattg
gagaaaatgaaacagagggttgaacgatacaaacaagatgtcaagagataccatgaacgc
aagcgccatctagatgtaattgagatgcttgaaagaaaaagaccttgggtggaatatgaa
actgttcgtcagcagcacgaggaagtgaaacaaatccgagaccaggccagggaagaactg
aagaatctgaaggaaatgcagtctccactgacgaaaaaaatgcaagaaattgaagaatct
tataagagtctggataggaaaataagatgtatggctggtgaaatcaaggaggcctctcaa
aaatgtaaacaaaagcaagatgatttggagatgaaagataagcaaattgaagaaattaat
caagctttcagaatgaaaaaagatgaagaaatggatagacgaaagaaaataataagtgct
cataagatgatagaggaatggaacgatgaactcagtacagtgaacgactgtgagaatctt
cagccacaaattgatgctgttaataaggaactgaaacatttacaaggagaaagggcaaac
attgagagcgatattagtgatgtaaaaacagagaaaaataaccaggaacgggaaaagaga
agaataattgatcgcattggacaacttaataatataatgagtatgaaagaagagactctt
aaagggaaatttcaagatacacactctgctcttatgtggctaagaaagaacaaagacaaa
tttaaaaaaacagtttgtgagcccatgatgcttgtgatcaatttgaaagacagtagacac
gctaaatatattgaaaatcacatctcggccaatgacatgaaggcttttgtttttgagagt
caagaagatatggaactgtttcttgtggagacacgtgatcatcagaaattaagagtgaat
gctgtgtgtgcacctgctgtatcatgtgctggaagcttaccttcaagacctattgaagaa
ttacaccaatatggatttttttcatatttacgagagttgtttgatgctccacttcctgtg
atgagttatctttgctcccaatatcgtattcatgatgtccctgtaggaacagagaagacc
agaaacatgatcgaaaaggtcatacaagaaaccaaacttaagcaagtatacacagcagaa
gaaaaatacactgttaaagtatctgcttacacaaacctaaccttctctactaacatgtct
ctgagagcagcccaatttctaactaattcggtggatacagatgaaagacagcagctggaa
aaacagcagcagggtatcaattgcacattacagtcattagatacgcagttgacaacattg
tttgagagacagaaacatctggaacgcagagacaatgagctcaggcaacagaagaaggag
ctcttagagagaggaaacagaagaagacagttggaatcaaaaattgctgtgaagtatgat
agtataaaacaactggaacaagattttatcaacctagaagaggaatctcaacaggcaaat
gtaaagatcaaagaaataaatattcaaaaagcaagacttgtttctgaattaatgcatctc
ataaagcattgtgtatcactgaacatcctcaaaacagatttggttcttcagagcactgcg
gtggatgctgagaagaacagactagaatcagagtataaagcagcaagtacgcagctaaga
gctttagagcaaaattttcgtgagctggatgagaaaaagcgggttcttacagaaaactgc
agggaactgatgaaaaaagctcgacagatgtgcaaactgagtccggatcaacatcttcca
aaagaatttcaaactgcttttcaggctcttccgaacacattggaggaaatagatgctgtt
ctgaatgacgagaaatccagggcctcctgtttcacaggcctgaatgcttcgattgttgaa
gagtacagtaagcaaactcaagaaatacagcaactgactgaagagctagaggaaaagaaa
aatgaattggataactataagcaaaacatttcacagatcaaagagaggtggctaaaccct
ttgaaaaggctgattgagaaaattaatgagaagttcagtaacttctttagctctatgcag
tgtgttggtgaagttgatcttcatgtggaaaatgaggaagagtacgacaaatatgggatt
cgcataagagtcaaattccatagcagcactgaacttcatgaattgactccctatcatcag
agtggaggtgagaaaagcgtttcaactatgttgtacctgatggctctacaggaactcaac
agatgtccttttagggttgtagatgaaataaatcagggaatggatccagtgaatgagagg
agagtttttgaaatggttgtgaaaactgcttgtaaagaaaacacatctcagtacttcctc
attacaccaaagctcctacagaatctcacttacaatgacaagatgacagtgttgtttgtc
tacaatggaccttatatgttggaagcaaacaaatggaacttaaagtctttctgtaggcag
cggcggcgacttggaaggatggatgaacagtga

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