KEGG   Oxyura jamaicensis (ruddy duck): 118157624
Entry
118157624         CDS       T11549                                 
Symbol
PTCH2
Name
(RefSeq) protein patched homolog 2
  KO
K11101  patched 2
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja04340  Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:oja00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04340 Hedgehog signaling pathway
    118157624 (PTCH2)
SSDB
Motif
Pfam: Sterol-sensing TRA2_N Patched
Other DBs
NCBI-GeneID: 118157624
NCBI-ProteinID: XP_035167917
LinkDB
Position
8:complement(join(18326..18730,18863..19108,19469..19568,19841..19983,20109..20246,20518..20801,21118..21298,21413..21555,21741..22053,22138..22543,22652..22770,22857..22982,23063..23155,23240..23395,23477..23608,23806..23953,24253..24374,24459..24654,26210..26301,26529..26598,26727..26842))
AA seq 1242 aa
MLIQTPKREGENILTQEALQLHLEAALAASKVQVSLYGKSWDLNKICYKSGVPIIENGMI
ERMIEKLFPCVILTPLDCFWEGAKLQGGSAYLPGRPDIQWSNLDPLQLMEELGQFTSLEG
FKELLDKAEVGQAYMERPCLDPRDPQCPPSAPNKQSQQSPDIPAELSGGCHGFSRKFMHW
QEELILGGTTKDSQGKLLSAEALQTMFLLMSPRQLFEHFKDDYEIHDISWSEEKAGAILE
AWQRKFVELAQDSIPPNATQSVHAFSTTTLNDIMKSFSDVSAIRVAGGYLLMLAYACVTM
LRWDCSKSQGAVGLAGVLLVALSVASGLGLCSLLGISFNAATTQVLPFLALGIGVDDMFL
LAHAFTETSQHVPFKERTGECLRRTGTSVALTSVSNMIAFFMAALVPIPALRAFSIQAAV
VVVFNFAMVLFIFPAILSMDLHRREKRRLDILCCFYSPCSSRVIQIQPQEFADANDNHAS
HPSPYGHPGVATSTQITTTVQAFTQCDPSGHHIVTVLPPTSQVCTSPAVLLPPADPLGSQ
VFTPSSSTRDLLAQLDEAKGGRECVPLPFCRWSLSDFAREKYAPLLLRTQTKAVVVVLFL
ALLGLSLYGTTMVHDGLYLTDIVPRDTKAHAFISAQFKYFSFYNMFIVTKGGFHYPGAQA
ALLSLHQAFSTVKYVVREGNHDLPKMWLHYFQDWLRGLQATFDRDWQAGRITHDSYRNGS
EDGALAYKLLIQTGNKKEPFNFNQLTTRRLVDENGIIPPDTFYICLTVWASNDPLGFAAS
QANFYPPPPEWIHDKYDTTGENLRIPAAQPLEFAQFPFYLSGLRRTADFVEAIESVRAIC
REAAQRHGVLSYPSGYPFLFWEQYIGLRHWFLLAISILLACTFLVCALLLLNPWTAGIIV
SILAMMAVELFGIMGLMGIKLSAIPVVILIASVGIGVEFTVHVALGFLTAAGSRNVRSAA
ALEHTFAPVMDGAVSTLLGVLMLAGSEFDFIMRYFFAVLTILTLLGLLNGLVLLPVLLSV
IGPPPEASPMDNGPRLSPPEPVSPCLGPGGLYIRRAPAWPAVFTDASDTECYGDGVGPGS
PRGPFIVPPAPAHILLEAGKDPSFPRITVLKPYKDSPELQGKKEPPQPTPPLPFGEPCPA
PPRDYPRPTALPRPGQSCSPGPRPALRGTLPSYSTHLQGPAGSYTTVTATASVTVALHPT
LPGSYPSFGAEADSLEEPGVPSAVPEAFEMQSLGGHGVGARR
NT seq 3729 nt   +upstreamnt  +downstreamnt
atgctgatccagaccccgaagcgggaaggggagaacatcctgacgcaggaggccctgcag
ctccacctcgaggcggccctggctgccagcaaagtgcaagtctcgctgtacggaaaatca
tgggatttgaacaagatctgctacaagtcgggcgtccccatcatcgagaacggcatgatc
gagaggatgattgagaagctgttcccctgcgtgatcctgacgccgctggactgcttctgg
gaaggggccaagctgcagggaggctcagcctacctcccgggccgccctgacatccagtgg
agcaacctggaccctctgcagctgatggaggagctggggcagttcacgtccttagaaggc
ttcaaggagctgctggacaaggcagaggtggggcaggcttacatggagcggccctgcctg
gacccccgggacccccagtgcccccccagcgcccccaacaagcagagccagcagagcccc
gacatcccagcggagctctcggggggctgccacggcttctccaggaaattcatgcactgg
caggaggagctgatcttaggtggcacaaccaaagactcccagggaaagctgctgagcgcc
gaggccctgcagaccatgttcctcctcatgagcccccggcagctgttcgagcacttcaag
gacgactacgagatccacgacatcagctggagcgaggagaaggcgggtgccatcctggag
gcctggcaaaggaaatttgtggagctggcgcaggactccatcccgcccaacgccacgcag
agcgtccatgctttctccaccaccacactcaatgacatcatgaagtccttctccgacgtc
agcgccatccgggtggccgggggttacctcctcatgctggcctacgcctgcgtcaccatg
ctgcggtgggactgctccaagtcccagggagctgtgggcctggccggggtcctgctggtg
gccctctctgtggcctctggcctggggctttgctcgctgctcggcatctccttcaacgca
gccaccacacaggtcctgcccttcctggccctcggcatcggcgtggatgacatgttcctc
ctggctcatgccttcaccgagaccagccagcacgtccccttcaaggagcggacgggcgag
tgcctgaggcgcacggggaccagcgtggctctcacctctgtcagcaacatgatcgccttc
ttcatggcagccctggtgcccatccctgccctgcgcgccttctccatccaggcggcggtg
gtcgtggtgttcaactttgccatggtgctgttcatcttccccgccatcctgagcatggac
ctgcaccggcgggagaagcgccggctcgacatcctctgctgtttctacagcccttgctcc
tcacgggtcatccagatccaaccccaggagttcgcggacgccaacgacaaccatgcctcc
cacccgtccccctatgggcaccccggcgtggccaccagcacccagatcaccaccaccgtg
caggccttcacccagtgcgacccctcgggccaccacatcgtcaccgtcctgccgcccacc
tcccaggtgtgcacctcgcccgccgtgctcctgccgcccgccgacccgctgggctcgcag
gtcttcaccccctccagctccacgcgggacctcctggcccagctggacgaggccaagggc
gggcgcgagtgcgtgcccctgcccttctgccgctggagcctctccgacttcgcccgcgag
aagtacgccccgctcctgctgcgcacccagaccaaggcggtggtggtggtcctcttcctg
gcgctgctggggctgagcctctacggcaccaccatggtgcacgacgggctctacctgacg
gacatcgtgccacgggacaccaaggcgcacgccttcatctcggcccagttcaagtacttc
tccttctacaacatgttcatcgtcaccaagggcggcttccactacccgggcgcccaggcc
gccctgctcagcctgcaccaggccttcagcaccgtcaagtacgtggtgcgggagggcaac
cacgacctgcccaagatgtggctccactacttccaagactggctgcgaggtctccaggcc
accttcgacagggactggcaagccgggcgcatcacccacgacagctaccgcaacggctcc
gaggacggggcgctggcgtacaagctccttatccagactggcaacaagaaggagcccttc
aacttcaaccagctgaccacacggcggctggtggacgaaaatggcatcatccccccggac
accttctacatctgcctgacggtgtgggccagcaacgaccccctgggcttcgccgcctcg
caggccaacttctacccgccgccccccgagtggatccatgacaagtacgacaccacgggc
gagaacctgcgaatcccggcagcccaacctctggagttcgcccagttccccttctacctg
agcgggctgcgtcgcacggccgatttcgtggaggccatcgagagcgtgcgggccatctgc
cgggaggccgcccagcgccacggggtgctgagctaccccagcggctaccccttcctcttc
tgggagcagtacatcggcctgcgccactggttcctgctggccatcagcatcctgctggcc
tgcaccttcctcgtctgcgccctgctgctgctcaacccctggacggccggcatcatcgtc
tccatcctggccatgatggcagtggagctgtttggcatcatggggctgatgggcatcaag
ctgagcgccatccctgtggtcatcctcatcgcctcagtgggcatcggcgtggagttcacc
gtccacgtggccttgggcttcctgacggcagcggggagcaggaacgtgcgctcagccgcg
gcgttggagcacacctttgcccctgtgatggacggcgccgtctccaccctcctgggcgtc
ctcatgttggccggctccgagtttgacttcatcatgaggtatttctttgcggtgctcacc
atcctgacgctgctggggctgctcaatgggctggtgctgctgcccgtcctgctctccgtc
atcggaccaccccccgaggcatcccccatggataacggcccccgcctgtcccccccggag
ccggtgtccccgtgccttggccccgggggtctgtacatccgccgggccccagcctggccc
gccgtcttcaccgatgcctcggacacggaatgttatggggatggcgtggggccgggcagc
ccccggggacccttcatcgtgccccccgccccggcacacatcctgctggaagccggcaag
gaccccagcttcccccgcatcaccgtgctgaagccctacaaggacagcccggagctccag
gggaagaaggagccaccccagcccacacccccgctgcctttcggggagccgtgccccgcg
ccacccagagactacccgcgccccacggcactgccacggccgggccagtcctgctcgccc
ggcccccggccagccctgcggggcaccctgccctcctacagcacccacctgcagggcccc
gccggcagctacaccaccgtcacggccaccgcctcggtgacggtggccctgcaccccacg
ctgcccggctcctaccccagtttcggcgcggaggcggacagcctggaggagcccggcgtg
cccagcgctgtgcctgaagccttcgagatgcagagcctgggaggccacggggtgggcgcc
cggcgctag

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