Oxyura jamaicensis (ruddy duck): 118161158
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Entry
118161158 CDS
T11549
Symbol
TRDMT1
Name
(RefSeq) tRNA (cytosine(38)-C(5))-methyltransferase isoform X1
KO
K15336
tRNA (cytosine38-C5)-methyltransferase [EC:
2.1.1.204
]
Organism
oja Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oja03016
]
118161158 (TRDMT1)
Enzymes [BR:
oja01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.204 tRNA (cytosine38-C5)-methyltransferase
118161158 (TRDMT1)
Transfer RNA biogenesis [BR:
oja03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
118161158 (TRDMT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_methylase
MTS
Thymidylate_kin
Motif
Other DBs
NCBI-GeneID:
118161158
NCBI-ProteinID:
XP_035172119
LinkDB
All DBs
Position
2:join(21488687..21488750,21496978..21497087,21499494..21499570,21501136..21501207,21504923..21504988,21508196..21508265,21509183..21509266,21509770..21510152,21514265..21514322,21515813..21515942,21520355..21520455)
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AA seq
404 aa
AA seq
DB search
MAALRVLELYSGIGGMHQALRESCTSAEVVAAVDVNTLANEVYKHNFPSTPLWAKTIEGI
TLKEFDRLSFDMILMSPPCQPFTRIGLQGDVSDPRTKSFLYILDILPRLQKLPKYLLLEN
VKGFESSSARNELLRTLETCGFKYQEFLLSPTCLGIPNSRLRYFLIAKLHQEPFFFHAPG
QILTRFPDLEDKIQVQEELCKDKVVDKECDSSSLPSGEKSLDPNVGPRCSSKKSLPEGAF
LFKLETAEEIERKHKQDNDSSIQMLTDFLEEENEEMSRYFLAPKFLVRYAFLLDIVKPTC
RRSTCFTKGYGHYVEGTGSVLQTAVDVQLESVFKHIENLPEEEKLMKLATLKLRYFTPRE
IANLHGFPPEFGFPDKVTVKQCYRLLGNSLNVHVVAKLISVLLG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgcgggtgctggagctgtacagcggcatcgggggcatgcaccaggccctg
agagaaagctgcacatctgcagaagttgttgctgctgttgatgtgaacactcttgccaat
gaagtttataagcacaactttcccagcacaccactatgggcaaagacaattgagggcata
acattgaaagaatttgacagattgtcttttgatatgattttgatgagccctccttgtcag
ccatttacaagaattggcctgcaaggtgatgtatctgatccgcggacaaagagctttctc
tacattcttgatattctcccaaggctccagaagcttccaaaatacctacttttagaaaat
gttaaaggatttgaatcctcttctgcaagaaatgaacttttgcgaacactagaaacatgt
ggatttaagtatcaggaatttctcttgtctccaacctgtcttggcattcccaattctagg
ctgcggtattttctaattgcaaagcttcaccaagagccatttttctttcatgctcctggt
cagatattgaccagattcccagatctagaagacaagattcaggttcaagaagagttatgc
aaggacaaagtagttgataaagagtgtgattctagttctttgccttctggagagaagagt
ctggatccaaatgttggtcctcgttgcagcagcaagaagagtttaccggaaggggccttt
ctttttaaacttgaaacagcagaagaaattgaaaggaaacataaacaggacaatgattcc
tctattcaaatgctaacagatttcctggaagaggaaaatgaagaaatgagtcggtatttc
ttagcacccaaattcttggtgcgctatgctttcttgttagacattgttaaacccacttgc
cggagatccacctgctttacaaaagggtatggacactatgtagaagggacaggctcagtt
ctgcagacagcagtggatgtacagctcgaatcagtgtttaaacacattgagaacttacca
gaagaagagaagcttatgaaactggcaacgctaaaactgaggtattttactccgagagaa
atagcaaatctacacggattccctccagaatttggctttcctgacaaagtaacagtgaaa
caatgttaccgtctcctgggaaatagcctcaacgtacatgtggtggcaaaattgatctct
gttctgcttggataa
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