Oxyura jamaicensis (ruddy duck): 118161715
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Entry
118161715 CDS
T11549
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
oja Oxyura jamaicensis (ruddy duck)
Pathway
oja03013
Nucleocytoplasmic transport
oja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118161715 (UPF3A)
03015 mRNA surveillance pathway
118161715 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oja03019
]
118161715 (UPF3A)
Messenger RNA biogenesis [BR:
oja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118161715 (UPF3A)
mRNA cycle factors
P-body specific factors
118161715 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
118161715
NCBI-ProteinID:
XP_035173191
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All DBs
Position
1:complement(join(141330865..141331038,141333593..141333887,141336051..141336205,141338090..141338248,141338340..141338395,141342238..141342348,141342444..141342542,141344678..141344784,141352205..141352311,141353591..141353713))
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AA seq
461 aa
AA seq
DB search
MAAPPRREPEASPQPPSPLPPPPLPPAPGKQREEKKTALSKVVIRRLPPCLTKEQLEEQL
HPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPEDILLFRDRFDGYVFIDNKGLEYPAVV
EFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYCADEEKICANPETLLGEIEAKTRE
LIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKKRLREEEKRKRREEERRKRKEA
EKQKKISEKEIRIKLLKKPEKGDEQASEKHKEKDEEADIEENKWDKSPGSGSIKSKSSEG
SLKELKSQNDSDKEQRDLERRFQEKEPERQRYRLDDGRKHRAHYEFDKFVRRNEEELKWG
KGYNQDRGKKGSHNYSFTVEAVDKLGKEDKCDDMASKKERIRNKDRPAMQLYQPGARIRT
HTGSTSKTYDCSGKSFEDALDKKYEADNSAGGGSEKSEEAE
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaccgccgcgccgggagccggaggcgtccccgcagccgccctccccgctgccg
ccgccgccacttcccccggcgcccggtaaacagcgagaggagaaaaaaacggcgctgagc
aaagtagtcattcgacgccttcctccttgtctaactaaggagcaactggaggaacagtta
catcctctacctgcccatgattattttgagttttgcactgctgatcccagcctttatcct
catctttactcgagagcatacattaactttagaaatcctgaggacatccttctttttaga
gatcgctttgatggctatgtcttcattgataataaaggtttggagtatcctgctgtggtt
gaatttgctccgttccagaagatttcaaaaaagaagttaaaaaagaaagatgccaaagcc
gggagcattgaagatgatccagaatataggaaatttttagagagttactgtgctgatgaa
gagaaaatctgtgccaatcctgagactcttttgggagagattgaggccaaaacaagggaa
ctcattgctagaagaacaacaccccttttggaatatattaaaaatagaaaattagaaaag
cagagaattcgagaagagaaacgagaggaacgaaggcggagagaattggagaagaaacgc
ttgcgggaggaagagaaaaggaagcgcagagaagaggaaagacgtaaaaggaaagaagca
gagaagcaaaagaaaatttccgaaaaagaaataaggatcaagcttcttaagaagcctgaa
aaaggagacgagcaggccagtgaaaagcacaaagaaaaagatgaagaagctgacattgaa
gaaaacaaatgggataagtcccctggatctgggagtataaaatccaaatcatcagagggc
tcactaaaagaacttaagtcacaaaatgatagtgacaaagagcaaagagatttggagaga
agatttcaagaaaaagaacctgaaagacaaaggtatcgattggatgatggcagaaagcat
agagctcactatgagtttgacaagtttgtgagaaggaatgaagaagagctgaaatggggg
aaaggatacaaccaagacagaggaaagaaagggagccacaactacagcttcactgtggag
gcagtagacaaactgggtaaagaggacaagtgtgatgacatggcatccaaaaaggagcgc
ataagaaataaggatcgtccagccatgcagctctaccagccaggagctcgcattcgaaca
catacgggatctacaagtaagacctatgactgcagtgggaaatctttcgaagatgctctt
gacaaaaagtatgaggcagataattcagctggaggtggttctgagaagagcgaggaagca
gaataa
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