KEGG   Oxyura jamaicensis (ruddy duck): 118162052
Entry
118162052         CDS       T11549                                 
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja04382  Cornified envelope formation
oja04510  Focal adhesion
oja04512  ECM-receptor interaction
oja04518  Integrin signaling
oja04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oja00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    118162052 (COL4A2)
   04518 Integrin signaling
    118162052 (COL4A2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    118162052 (COL4A2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    118162052 (COL4A2)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    118162052 (COL4A2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oja04147]
    118162052 (COL4A2)
   00536 Glycosaminoglycan binding proteins [BR:oja00536]
    118162052 (COL4A2)
Exosome [BR:oja04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   118162052 (COL4A2)
Glycosaminoglycan binding proteins [BR:oja00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   118162052 (COL4A2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 118162052
NCBI-ProteinID: XP_035173862
LinkDB
Position
1:join(143443010..143443053,143443195..143443280,143483064..143483146,143530736..143530870,143530953..143530997,143533100..143533216,143533911..143533982,143535533..143535568,143535667..143535729,143537563..143537598,143538265..143538306,143538858..143538932,143540106..143540150,143541295..143541354,143542124..143542168,143544803..143544856,143545128..143545194,143546019..143546120,143546520..143546675,143548413..143548505,143548767..143548933,143550476..143550548,143550635..143550741,143551886..143552087,143552882..143552941,143553725..143553787,143557340..143557447,143558130..143558351,143560593..143560754,143561324..143561498,143562625..143562761,143563362..143563487,143563839..143564020,143564875..143564938,143565305..143565379,143565983..143566090,143567040..143567147,143568422..143568493,143568907..143569032,143570151..143570267,143571828..143571989,143572121..143572219,143572881..143573027,143573622..143573738,143574560..143574751,143575107..143575393,143578251..143578505)
AA seq 1722 aa
MDIAQLPSARGLVCQDLGVVLVLLEVVLSAVRVDAVSTTKRRAKGGKTYTGPCGGRDCSG
GCQCFPEKGGRGQPGLLGSQGFPGPPGLMGIPGVQGPKGHKGERGHPGITGPKGETGLRG
VTGFPGADGVPGHPGQPGSRGKPGHDGCNGTVGDPGDSGTPGFSGLPGTIGVQGPKGQKG
EPYILPPDIASRYRGEPGDPGFSGLPGPTGILGVQGPVGPRGERGRPGPPGPPGPQGSQG
NRGLGYYGEKGEQGPPGPPGPPGLPTGELLGVPSDKHKGERGERGQKGEPGQPGIRYAGE
RGEKGVIGFSGQRGLPGIDGSPGLTGERGFSGPDGLPGGYGRRGAKGEQGEMGPPGPPVY
VPYHIPRKGTRGEPGFPGASGLQGEPGEQGDRGLPGLPGFSDGDGDKPGLPGEMGPKGEK
GELGSPAYQAGPPGFPGKHGEPGLRGPPGPAGIPGSLFGLKGREGTPGRPGTQGYPGPRG
QKGPKGEEGDCSKCLLGDELRRGSTGPPGPPGFPGTPGQPGRKGEPGDQGPHGIPGYPGA
KGLSGREGFPGPKGEKGDSFYITTKGTKGIRGDPGLPGIRGGDGFPGRDGLDGLPGQPGL
PGDTIRGFPGDPGYPGELGPKGFPGETGLPGEGFVGPKGYRGPPGDHGTDGSPGPPGLPG
PPGEPGQLDCGQVIEDFSRGDGTEPIWSGGGCVRPPKGSQGKPGLPGATGAKGARGFPGD
PGPVGYPGLNGTRGDPGREGLPGPPGFTGPRGDRGPNGLPGLQGHPGLTGKSGAPGLAGQ
KGVPGEVLRATAGSRGDAGLPGFPGLKGAPGDQGVPGVRGADGSPGLPGAKGDPGLQGLP
GLMGLPGSPGTHGFPGPPGNPGPDGGPGSQGPLGPPGARGEDGEQGFPGPVGLKGLSGDK
GETGYPGLQGIPGVIGPPGISGMDGFPGDKGKGSPGVDGFKGMPGLKGRPGIKGTKGEFG
SFGARGDKGAQGARGFKGDRGEQGPPGEPPKLKPSMMMEVKGEKGDVGETGTKGFFGLKG
SKGMPGLPGKTGIPGSPGHPSYVAGVKGDIGAKGLTGLKGYPGPAGSPGIRGFPGSTGGR
GDKGVPGISGHFGTPGSHGEIGEPGDTINLPGMPGLKGEVGVPGLTGLRGGPGQKGEGGE
PGIPGIEGIKGTQGAPGSLGQEGLPGLVGPPGQQGSPGTPGFQGEKGTPGWPGLPGQAGL
PGLRGISGLHGLPGTKGLPGSPGPDGYGSVGFPGTVGDKGEAGEPSRVEGSRGPPGQKGD
RGVPGIQGTFGIPGQDGFPGPPGFSNISGYPGDKGSPGLDGVPGYPGLQGQPGVPAPPGS
KGESGQAGVSGQTGPKGARGDPGLAGRPGIPGYPGPKGRKGEQGVIGFMGTVGFPGDLGP
IGPKGDRGLTGFQGPPGSPGLPPLPPRLVAEQGSPGPRGNTGPQGSPGDMGPQGPPGDPG
FRGSPGDPGLQGRGGIPAPPGSRGEQGAMGFQGPVGFEGQPGRPGSPGLPGMPGRSVSIG
YLLVKHSQSDQEPMCPIGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYC
NPGDICYYANRNDKSYWLSTTAPLPMMPVAEEEIRPYISRCSVCEAPAVAIAVHSQEASI
PRCPEGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFA
NKYSFWLTTIDQPFQSKPSGDTLKAGLIRSRISRCQVCMKNL
NT seq 5169 nt   +upstreamnt  +downstreamnt
atggacatcgcgcagcttcccagcgcgcgtggtttggtttgtcaggatctgggggtcgtg
ttggtcctgctggaggtggtgctgtcagccgtcagagtagatgctgtaagtacaacaaaa
cgccgtgcgaagggtggaaagacttacacaggaccatgtggaggaagggactgcagtgga
ggatgccagtgttttcctgaaaaaggaggccgtggccagccaggactccttggatcacag
gggttccctggaccaccaggattgatggggatcccaggagtgcaaggtcccaaaggtcac
aaaggtgaaagaggacatccaggaataactggacccaaaggagaaacggggctaagagga
gtcactggattcccaggggcagatggcgttcctggtcatccagggcagccaggatcaagg
gggaaaccaggtcatgatggctgtaatgggacagtaggtgaccctggcgactcaggaact
ccaggattctctggtttgcctggtaccattggagtccaaggaccaaagggccagaagggg
gagccatatatactaccaccggacattgccagccgataccggggagaacctggggatcca
ggattcagtggtttaccaggacctacaggtatactgggtgttcaaggacctgtaggtcca
agaggagagcgaggaagaccaggaccaccagggcccccaggaccacaaggatcacaaggc
aacaggggccttggctactatggagaaaaaggtgaacagggacccccaggtccaccaggt
ccacccgggcttcctacaggagaactgctgggtgtcccctctgacaaacacaagggtgaa
agaggagaacgagggcaaaaaggggaacctggacaaccaggtatacggtacgctggtgaa
agaggtgaaaaaggggtaataggcttctcaggacaaaggggactgcctggtattgatggc
tctccaggactcactggagaaagaggtttttcaggacctgatggcctaccaggtggatac
ggtcgtagaggagccaagggagagcagggcgagatgggtcctcctggaccacctgtctat
gttccataccatattccaagaaaaggtacaagaggtgaaccaggctttccgggtgcttct
ggactacagggagaaccgggagagcagggagatcgtgggctgcctggtcttcctggattc
tctgatggagatggggataagccaggtttacctggagaaatgggaccaaaaggtgaaaaa
ggtgaattaggatctcctgcatatcaggcaggcccgcctgggtttccgggtaagcatggt
gaaccagggctccgtggtcctcctggtcctgctggaattcccggttctctctttggatta
aaaggacgggaagggacaccaggtagacctggcacacaaggttaccctgggccaagagga
caaaaaggacccaaaggcgaagaaggggattgcagcaaatgccttctgggtgatgaactc
agaaggggctccactggcccccctggcccgcctggttttccaggaacccctggccagcca
gggagaaaaggagaacctggtgatcaaggtccacatggtattcctggctaccctggagca
aaaggattgtcaggtcgagaaggatttccagggccaaaaggagaaaagggagattctttt
tacataactactaaaggcaccaaaggaatccgaggagatcctgggcttcctggtatcaga
gggggagatggttttccaggcagagatggattagatggcttaccaggacagcctggcctt
ccgggtgacactatcaggggcttccctggcgaccctggttatccaggcgaattaggccca
aagggctttccaggggaaacgggtctgccaggtgaaggatttgttggtccaaaagggtac
cgtggtcctccaggtgaccatggaacagatggaagccctggacctccaggtctgcccggt
ccaccaggagagcctggccaactagactgtgggcaggtcattgaagacttttctagagga
gatggaactgagccaatatggtcaggtgggggctgcgtgaggccaccaaaggggtcccag
ggcaagccaggactgccaggagccacaggtgctaaaggtgcaaggggatttccaggtgat
ccaggcccagtgggatacccagggctcaatggtacacgaggtgatccaggtcgggaagga
ttgccaggtcctccaggttttactgggcctcggggagacaggggcccaaatggactacct
ggactacagggacacccaggccttacaggaaagtccggtgctccaggactggcaggacag
aagggtgttcctggtgaagttttgagagcaacagcaggttctcgaggggatgctgggctg
cctggcttccctggcttgaaaggcgcacctggagatcaaggagtaccaggagttagagga
gcggatggtagcccaggcttgccaggagccaaaggcgatccagggctgcaaggtctccct
ggtctgatgggcttgccaggatcaccaggaacacatggattcccaggcccaccagggaac
cccgggcccgacggcggacctgggtctcaaggacctcttggtccaccaggtgcaagggga
gaagatggtgagcaaggttttcctggtcccgtgggcctgaaaggtctgtctggtgacaaa
ggtgaaacagggtacccaggactgcaaggtatacctggcgtgattggtccccctggcatc
agtggaatggatggctttccaggagataaaggtaaaggttcacctggcgttgatggtttc
aaaggcatgccaggcctgaaaggaagaccaggaatcaaagggaccaaaggagaatttggt
tcattcggggctcggggcgataaaggcgcgcagggcgcacgaggctttaaaggtgaccgt
ggggaacagggtcccccaggagagcccccaaagctgaagcctagcatgatgatggaagtt
aaaggtgaaaaaggagatgttggagaaaccggcaccaagggattctttggcttgaaaggt
agcaagggaatgccaggcctccctggtaagacaggaattcctgggtctccagggcacccc
agttacgtggctggtgtgaagggggacatcggtgcaaaaggactgacaggtctgaaagga
taccctggtccagctggctctcctggcatcagaggcttccctggcagcacaggaggcagg
ggagataagggtgtcccaggaatttcaggccattttggtactcctggctcccatggtgaa
ataggtgagccaggagatactataaacttaccaggaatgcctggccttaaaggggaagtc
ggtgtgccaggcctaacaggtttaagaggaggcccaggacagaagggcgaagggggtgag
cctggcatccctggtattgagggcatcaagggcacacagggtgcccctggctccttggga
caggaaggtttgccaggactcgttggccccccagggcagcaaggaagccccgggacacct
ggatttcaaggtgaaaagggaactcctggctggcctggcttacccggacaagcaggcttg
cctggcttgagaggaatcagtggactgcacggcttaccaggcactaaggggctgccagga
tcaccaggtccagatggctacggctctgtaggcttcccaggtaccgtgggtgacaaagga
gaagcaggagagccgagcagagtggaaggcagccgaggccctccgggtcagaagggagac
agaggtgttccagggatccaaggaacctttggcattcctgggcaggatggatttccaggg
cctcctgggttttcaaacatatcaggatatcctggtgataaaggttccccaggtctggac
ggagtgccaggctatccaggactacaggggcagcctggagtaccagctccacctggaagc
aaaggagaaagcggacaagcaggtgtgagcggacaaaccggcccaaaaggagctagaggt
gaccctggattagcagggagacctgggattcccgggtaccctgggccaaaaggtcgaaag
ggtgaacaaggtgtcatcggctttatgggcacagtaggatttccaggtgatctgggaccc
atcggacccaagggggacagagggctaactggctttcagggccctccaggctctcctggg
ctgccgcctcttcctccaaggctggttgctgagcaaggttcaccaggtccccgtggaaat
acaggacctcagggaagcccaggagatatgggccctcagggtccaccaggcgatccaggt
ttcagaggctcacctggagacccagggctccagggcagagggggcattccagctcctcct
ggatccagaggtgaacaaggagcaatgggatttcaaggtccagtgggatttgaaggccag
ccaggccgccccggtagccctgggctgccaggcatgccgggtcgtagcgtcagcatcggc
tacctgctggtgaagcacagccagtccgaccaagagcccatgtgtccgatcggcatgaac
aaactctggagtgggtacagcctcctgtacttcgaagggcaagagaaagcacacaaccag
gacctagggctggccggctcatgcttggctcgtttcagtacaatgccattcctctactgt
aaccctggggatatttgttactatgcaaatcgaaatgataaatcctactggctctcgact
acagcacctctcccaatgatgcctgtggcagaagaagaaattagaccatatatcagccgc
tgctcagtctgtgaggccccagctgtggcgattgctgtccatagccaagaagcttctatt
cctcgctgtcctgaaggctggcgcagtttgtggattggatattccttcctcatgcacact
gcagctggtgatgaaggtggaggacagtcgctggtttctcctgggagctgcctggaagat
ttcagagctactcctttcatcgaatgcaatggcgcacgcggaacctgtcattactttgcg
aataaatacagcttctggctcactacgattgaccagcccttccaaagcaagccctcagga
gatacactcaaggcaggactcatccgaagccgtatcagcagatgccaagtctgtatgaaa
aatttatag

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