Oxyura jamaicensis (ruddy duck): 118163083
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Entry
118163083 CDS
T11549
Symbol
NR1D2
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group D member 2
KO
K08531
nuclear receptor subfamily 1 group D member 2
Organism
oja Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oja03000
]
118163083 (NR1D2)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oja03310
]
118163083 (NR1D2)
Transcription factors [BR:
oja03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
118163083 (NR1D2)
Nuclear receptors [BR:
oja03310
]
1. Thyroid hormone like
1D. Rev-Erb
118163083 (NR1D2)
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Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
LpxD
Motif
Other DBs
NCBI-GeneID:
118163083
NCBI-ProteinID:
XP_035175435
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Position
2:join(40186845..40186934,40186936..40187053,40188930..40189018,40190008..40190152,40191819..40192435,40195795..40195980,40199827..40200037,40204464..40204660)
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AA seq
550 aa
AA seq
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MSQRELRQRFPVILFACTIFSEQLLLGKQLNGRSSEGSDGAPKSDRLEETVKPSQSGVAG
LTKGHNGVTKFNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNNN
CSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFSG
HLPNEALAEHQDQAPQEELSSKPKQERETLKSPSSPPSSDMAKEEVIGMVTRAHKDTFMY
NQEQSQNPAEVMQSQGGERVSKNVEQYMMSSEHCVSGLSGPQYPESEQHLGGQYKGRSTM
HYPSGHAICFTNGHCMNFTNGYTQRLCDRIPEDVFSPNRNTTYSCSTGGRMHLVCPMSKT
PHVDPNKSGHEVWEEFSLSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVR
FASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAV
VLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHS
EELLAFKVHP
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagcgagagctcagacagcggtttccagtcatcctcttcgcctgtaccatcttc
tccgaacagctcctcctcggaaagcagctgaatggccggagcagcgagggctctgacggg
gcaccaaagagcgaccggctggaggagactgttaaaccaagccagtcgggcgttgctggt
ttgacaaaaggccataatggagtcacaaaattcaatggaatggttcttctctgcaaagtc
tgtggcgatgtcgcttcaggatttcattatggtgttcacgcctgtgagggctgcaagggt
tttttcagaagaagcattcagcaaaacatccagtataagaagtgcttgaagaataacaac
tgctctataatgagaatgaataggaaccgatgccagcagtgtcgtttcaaaaaatgtctg
tctgttggaatgtcaagagatgctgttcgatttggccgcattcctaaacgcgaaaagcag
aggatgctgattgagatgcagagtgccatgaaaaccatgatgaacagtcagttcagcggc
cacttgcccaatgaagcattagcagaacatcaagatcaagcacctcaagaagagctttcc
tctaaacccaaacaggagcgggaaaccctcaaaagcccctcttcccctcctagctctgac
atggctaaggaagaagtgattggtatggtcactagggcccacaaagatactttcatgtac
aatcaggagcagtcccaaaacccagcagaagtgatgcagtcccagggtggggagagagtg
tcaaagaacgtcgaacaatatatgatgagcagtgagcactgtgttagtgggctcagcggc
ccgcagtaccccgaaagtgagcagcaccttggcggacagtacaaagggagaagcacaatg
cattacccaagcgggcacgccatatgtttcacaaatggccactgtatgaacttcaccaac
ggttacactcagcgactgtgtgataggatcccagaagatgtcttttctccaaacaggaat
accacttactcttgcagcactggcggaagaatgcatctggtctgcccgatgagtaagact
ccgcacgtggacccaaacaagtctggccatgaagtctgggaagagttttccctgagtttt
acccctgcagtgaaggaagtggtggagttcgccaagcgcatcccgggtttccgagatctc
tcccaacatgaccaggttaatcttctgaaggctgggacctttgaggttttgatggtacgg
tttgcatctttgtttgatgcaaaggagcgtaccgtcaccttcctcagtggaaagaagtac
agtgtggacgacttgcattcgatgggagctggtgatctgctcaactcaatgtttgaattc
agtgagaaactgaatgccctgcaacttagcgatgaggagatgagtttatttacagcggtt
gtcctggtatctgctgatcgctctggaatagaaaatgtcaattctgtggaggcacttcag
gaaacactaatccgtgcattaaggaccttaatcatgaaaaatcaccccaatgaagcctct
attttcacaaaacttcttctgaagttacccgacttgcgttccttaaacaacatgcactct
gaagaactcttggcctttaaagttcacccatag
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