Oxyura jamaicensis (ruddy duck): 118164257
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Entry
118164257 CDS
T11549
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
oja Oxyura jamaicensis (ruddy duck)
Pathway
oja03273
Virion - Lassa virus and SFTS virus
oja04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118164257 (PCDH20)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
118164257 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oja01009
]
118164257 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oja04515
]
118164257 (PCDH20)
Protein phosphatases and associated proteins [BR:
oja01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118164257 (PCDH20)
Cell adhesion molecules [BR:
oja04515
]
Cadherins
Protocadherins
118164257 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_CLSTN
Cadherin_2
Cadherin_CELSR2_9th
Ig_Cad99C_N
Ig_BT4661_1st
Motif
Other DBs
NCBI-GeneID:
118164257
NCBI-ProteinID:
XP_035177560
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All DBs
Position
1:join(168689326..168689475,168690676..168693381)
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AA seq
951 aa
AA seq
DB search
MGTVSGCRGEERRRAGGGAGALLGCSRRRRPGMGPPGSRGSTSSARGSLQHLLLFLLFAG
PFNCFASYSRATELFYSLNEGLPAGVLIGSLARDLRLPTASGQHLTDPQPPLSFTLASRG
LGGQYVHLDNRSGELHTSALEIDREALCVESSGAAVFGEADSMSSSFSSSLSSESCLLLL
DVLVLPQEYFRLVKVKIAIRDVNDNAPRFPVPHILLSVPENAPVNTRLAIEHPALDPDVG
TNGVQTYRLRDNYGVFTLDVEENESGERTPYLIVMGALDRETREEYVTVIIAEDGGTPPL
VGSATLTIGISDINDNCPQFSDSQLNVTLYGNSSLGTHVATVHAEDMDLGSNAEIAYSYS
QKVPQPSRDLFHLDESTGAITLSSKIDGDAPKLHRLIILGNGPGCIPAVITVLVTIIKVM
MRPPEVVPRFIANEVEGVVYLKELEPINTPIAFFTIKDPDEKYKVNCYLDGDGPFRLSPY
KPYNNEYLLETTKPLDYETQQLYEISVVAWNSEGFNVNKIIKIQVLDDNDNSPVFSQQLI
ELSIEENNVPNAFLTKLHATDADSGERGEVFYFLGPDAPSYFSLDKTTGVLTVATQLDRE
EKEKYRYTVKAVDSGFPPRESIATVTITVLDKNDNSPRFINKDFSFFVPENFPGFGEIGV
ISVTDADAGQNGWVALSVLNGSDIFVIDTGKGVLRAKVSLDREQQSSYVLWIEAVDGGDP
ALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPITEVYAVDKDTGMNAVI
AYSIIGRRGPRPESFRIDPKTGNITLEESLMQNDYGLYRLLVKVSDHGYPEPLHSTVMVN
LFVNDTVSNESYIESLLRKEPDINIEEKQPQISIEPTHQKMESATCMPTLVALSIISLGS
IALVTGMGIYICLRKGKKHHRADENMDVQIPLNGRINLHMLEKKPMEISNI
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgggcacggtctcgggctgccgcggggaggagaggcgccgggcgggcggcggagcgggc
gcgctgctggggtgcagccggcggcggaggccgggcatggggcccccgggcagccgcggc
agcaccagcagcgcccgcggcagcctccagcacttgctcctcttcctcctcttcgctgga
ccgttcaactgctttgccagttacagccgtgccaccgagctcttctacagcctcaacgag
gggctgcctgctggagtgctcattggcagcctggcccgtgacctgcggctgccaacagcc
agcgggcagcacctcacggacccccagccacccctctccttcaccctggcctcccgtggc
ttggggggacagtacgtgcatctggacaaccgctccggagagctgcacacctcagccctg
gagatcgaccgggaggctctgtgcgtggagagcagtggggctgctgtctttggggaggca
gatagcatgtcctcctccttctcctcctcactctcgtccgagtcgtgcctgctgctgctg
gacgtgctggtgctgccacaggagtatttccgcctggtgaaggtgaaaattgctatccga
gatgtcaacgacaacgctccccgcttccctgtgccccacattctcctctcggtgcctgag
aatgcacctgtgaacacccgcctggctatcgagcaccctgcccttgaccccgacgtgggc
accaatggtgtccagacctaccgtctgcgagataactatggtgtcttcactctggacgtg
gaggagaacgaaagcggagagaggaccccctacctgattgtcatgggggctctggacaga
gagacacgggaggagtacgtcacagtcatcattgctgaagatgggggcactcctccgctc
gtgggcagtgctacgcttactattggcatcagcgacatcaatgacaactgcccccagttc
agcgactcgcagctcaacgtcaccctttatgggaattccagcctagggacacacgtggcc
actgtccacgcagaagacatggaccttgggtccaatgcggagatcgcctactcctacagc
cagaaggtccctcagccatccagagacttgttccaccttgatgaaagcacaggagccatc
acactctccagtaagattgatggggacgccccaaagctccacaggctgatcatattgggc
aatggtcctggttgtatccctgctgtgatcacagtgctagtgaccatcatcaaagtcatg
atgaggccacctgaagttgtccctcgtttcatagctaatgaagtggaaggagtggtctac
ttaaaggaattggagcctattaacacaccaatagcattttttaccatcaaagaccctgat
gaaaaatacaaagtcaattgctatttggatggtgatgggcctttcagactttcaccatac
aagccatacaacaatgaatacctcttagagaccacaaaacctttggactatgagacacag
cagctgtatgaaatctctgtagttgcatggaactcagaaggttttaacgtaaacaaaata
atcaaaatacaagttttggatgacaatgacaactcaccagttttctctcaacagctgata
gaattatccattgaggaaaacaatgttcccaatgctttcttgaccaaactgcatgctaca
gatgctgacagtggtgaaagaggggaagtgttctattttttagggcctgatgctccttcc
tatttttctttggataaaaccacaggagttcttacagttgccactcaactggacagagaa
gaaaaggagaaatacagatatactgtgaaagcagtagattctgggtttcctccaagagaa
tcaatagcaactgtcaccatcactgtattggataaaaatgataatagtccaagatttatc
aataaggatttcagcttttttgtgccagaaaactttccaggttttggtgaaattggagtt
atcagtgtcacagatgctgatgcagggcaaaatggatgggttgccctttcagtcctgaat
ggaagtgatatttttgtcatagatactggaaaaggagttttgagagctaaagtctccctg
gacagggaacagcaaagttcctatgtgctatggattgaagcagttgatggtggtgatcct
gccctgtcttctactgcaaaaataactatccttcttctggacataaatgacaacccccct
ttggtcttgtttccacagtctaatatgtcttatttgttggttcttccttctacccttcct
ggttctcccatcactgaggtctatgctgtcgataaagacactggcatgaacgcagtcata
gcatacagcataataggaagaagaggcccccggccagagtcatttaggattgaccctaaa
actggtaatatcaccttggaagagtcgcttatgcaaaatgactacggtctgtatcggctg
cttgtaaaagttagtgatcacggctatccagaacctctccattccactgtcatggtgaat
ctcttcgtcaatgacacagttagcaatgagagctacattgaaagtttattaagaaaagag
cctgatatcaatatagaagaaaagcagccacaaatatccatagagcctacacatcaaaaa
atggagtcagcaacttgcatgcctactttagtagctctgtcaataataagcttgggttca
attgctttagtaactgggatgggcatttacatctgtctgagaaaagggaaaaagcatcac
agagcagatgaaaacatggacgtacaaatcccattaaatggaagaattaacctgcacatg
ttggagaagaaaccaatggagatttccaacatatga
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