Oxyura jamaicensis (ruddy duck): 118164393
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Entry
118164393 CDS
T11549
Symbol
FDFT1
Name
(RefSeq) squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
oja Oxyura jamaicensis (ruddy duck)
Pathway
oja00100
Steroid biosynthesis
oja01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
118164393 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
oja01006
]
118164393 (FDFT1)
Enzymes [BR:
oja01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
118164393 (FDFT1)
Prenyltransferases [BR:
oja01006
]
Terpene biosynthesis
Squalene/phytoene synthase
118164393 (FDFT1)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
SCC3_C
HAUS4
Motif
Other DBs
NCBI-GeneID:
118164393
NCBI-ProteinID:
XP_035177793
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All DBs
Position
3:complement(join(115125159..115125380,115126764..115126916,115131396..115131572,115132511..115132702,115133117..115133245,115134623..115134806,115137765..115137862,115139546..115139647))
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AA seq
418 aa
AA seq
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MELLRTWLGHPEDIYNLLRFKMGGYRAVMPRIDPDSLGLGLRTCYRYLNQTSRSFAAVIQ
ALDGELRHAVCIFYLVLRALDTIEDDMTISLDVKVPMLHEFHSYLYQPDWKYMESKEKDR
QVLEDFPTISMEFRNLSKVYQDVISDICHKMGVGMAEFLEKKVDSQREWDKYCHYVAGLV
GIGLSRLFSASELEDPIVGQDTELANSMGLFLQKTNIIRDYLEDQLEGREFWPREVWSRY
AKKLSDLAKPENIDMAVQCLNELITNALHHVPDVLTYLSRLKNQSVFNFCAIPQVMAIAT
LAACYNNKQVFRGVVKIRKGQAVTLMMDATNIQAVKAIMYQYVEEIYQKIPSTDPSSNKT
QQIIASIRAMSLPGGPMASRHHYSPIYLSCAMLLAALSWQYLSTISKAAEEYVQAGEN
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggagctgctgcggacatggctggggcaccccgaggacatctacaacctgctgcgcttc
aagatgggcggctaccgggccgtcatgcctcgcatcgacccggactcgttgggactcggc
ctccgcacctgctaccgctacctcaaccagaccagccgcagcttcgccgctgtcatccag
gccctggacggagagctgcgacatgccgtctgtatcttctacctagttctgcgtgccctg
gacaccatagaggatgacatgaccatcagcttggacgtaaaggtcccgatgctgcacgag
tttcactcctatctctatcagccggactggaagtacatggagagcaaggagaaggaccgc
caggtgctggaggacttccccacgatctccatggagttcaggaacctgtcaaaagtctac
caggatgtgatttcagacatttgtcacaagatgggtgttgggatggccgagttcttggag
aagaaggtggattctcagcgtgagtgggataagtactgtcactacgtagctgggctggtg
gggataggcctttcccgtctcttctctgcatcagagctagaagatccgattgtcggacag
gacacggagctggcgaactccatgggcctcttcctgcagaaaaccaacatcatccgtgac
tatctggaggaccagctggagggaagggagttctggcccagagaggtttggagcagatac
gcaaagaagctctcagacctcgccaaaccagagaacattgatatggctgtccagtgtctg
aacgagctcatcaccaacgctctccaccatgtccctgatgtccttacgtacctgtcccgc
ctgaaaaaccaaagcgtcttcaacttctgcgcgatcccccaggtgatggccatcgccact
ctggctgcctgctataacaacaagcaggtgttcagaggcgtagtgaagatccggaaggga
caagccgtcactctgatgatggatgccacgaacatacaggctgtcaaagccatcatgtac
cagtatgtggaagagatctaccagaagatccccagcacagacccttcgtccaacaagacg
cagcagatcatcgcctccatccgcgccatgagcctgcccggcggccccatggcctcgcgc
caccactactcccccatctacctgtcatgtgccatgctgctggccgccctcagctggcag
tacctcagcaccatctccaaggccgccgaagagtacgtccaggcgggcgagaactga
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