Oxyura jamaicensis (ruddy duck): 118165313
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Entry
118165313 CDS
T11549
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
oja Oxyura jamaicensis (ruddy duck)
Pathway
oja04120
Ubiquitin mediated proteolysis
oja04137
Mitophagy - animal
oja04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
118165313 (PRKN)
04120 Ubiquitin mediated proteolysis
118165313 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
118165313 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oja04131
]
118165313 (PRKN)
04121 Ubiquitin system [BR:
oja04121
]
118165313 (PRKN)
03029 Mitochondrial biogenesis [BR:
oja03029
]
118165313 (PRKN)
Enzymes [BR:
oja01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
118165313 (PRKN)
Membrane trafficking [BR:
oja04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
118165313 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
118165313 (PRKN)
Xenophagy
Other xenophagy associated proteins
118165313 (PRKN)
Ubiquitin system [BR:
oja04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
118165313 (PRKN)
Mitochondrial biogenesis [BR:
oja03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
118165313 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR_1
IBR
Rad60-SLD
Rcat_RNF216
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
118165313
NCBI-ProteinID:
XP_035179199
LinkDB
All DBs
Position
3:join(47089393..47089399,47240620..47240783,47332549..47332789,47362427..47362545,47434937..47435020,47461746..47461861,47548368..47548504,47707264..47707325,47720107..47720256,47816780..47816866,47828076..47828193,47833029..47833138)
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AA seq
464 aa
AA seq
DB search
MIVFVRFNSSHGFPVELGSDASILQLKEVVAQRLAVPADQLRVIFAGKELSNDLTLQNCD
LTQQSIVHIVQSPQKSSQKNDEAENKHAGGILKTLERESESLTRIDLSSSILPSLSAGLA
VILDTTKPNISLPSEKSGAASYNSFYVFCKDFCQAVKPGKLRVRCSVCKQGTLTLARGPC
CWDDVLIPKRITGVCQSQRCNGTIAEFYFKCGAHPTTDSETSVALNLVTTNSRSITCITC
TDIRSPVLVFQCMHRHVICLDCFHLYCVTMLNDRQFIHDLELGYSLPCVAGCPDSLIKEL
HHFRILGEEQYNRYQRYGAEECVLQMGGVLCPTPSCGAGLLPEPGVRKIVCETGNGLGCG
FVFCRECKEEYHEGECSSLLSMQGAMAQKGYAVDEHAAMQARWEEASKETIKKTTKPCPN
CHIPVEKNGGCMHMKCPRPQCKFEWCWNCGLEWNRTCMGDHWFD
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtttgtcaggttcaactccagccatggcttcccggtggagcttgggtcagac
gccagcatcctccagctgaaggaggtggttgcacagcgactggcagttccagctgaccag
ctgcgggtgatttttgcaggaaaggaactcagcaacgacttgacgctgcagaattgtgac
ctgacccagcagagtatcgttcatattgttcagagtccacagaagagcagtcagaagaat
gacgaggcagaaaataagcatgctggaggcattctaaaaaccttggaaagagaatctgaa
agtctaactcgcatagatctcagttcaagcatcctcccatcactgtctgcagggttggct
gttattctggatactacaaaacccaacatttctcttccttctgaaaaatcaggtgcagct
agttacaacagtttttatgttttctgcaaagatttctgccaagctgttaaacctgggaaa
ctaagggtccgctgcagtgtgtgtaaacaaggaacgctgactttggcaaggggcccatgt
tgctgggatgatgtgctgattccaaagagaataacaggtgtttgccagtcccaaaggtgc
aatggaactattgcggagttttactttaaatgtggagcacacccaacaactgacagtgaa
acatctgtggctttgaacctcgttacaacaaacagtcgctctatcacatgtataacatgc
acagatattaggagtcctgtgcttgtgttccagtgcatgcatcgccatgtcatttgccta
gattgtttccatttgtactgtgtgactatgctgaatgaccgtcagttcatccatgacctg
gagcttggctactccctcccttgtgtagctggctgtccagattccttgattaaagagctt
catcacttcaggattctgggagaagaacagtacaaccgctaccagcgctatggtgcggag
gaatgcgtactgcagatgggtggcgtgctgtgtccaactcccagctgtggagcgggtttg
ctgcctgaaccaggagtgaggaaaattgtatgtgagacaggcaatggactaggctgtggg
tttgtgttctgccgtgaatgtaaagaagaataccatgaaggggaatgcagctctctcctc
agcatgcagggagccatggcccagaagggatatgcagttgatgaacatgcagccatgcaa
gcccgatgggaagaggcatctaaagaaacgatcaagaaaacaaccaagccttgccccaac
tgccatattccagtagaaaaaaatggtggctgcatgcacatgaagtgtcctcgacctcag
tgcaagtttgagtggtgctggaactgtggcctggagtggaacagaacctgcatgggcgat
cactggtttgactga
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