Oxyura jamaicensis (ruddy duck): 118165550
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Entry
118165550 CDS
T11549
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
oja Oxyura jamaicensis (ruddy duck)
Pathway
oja03013
Nucleocytoplasmic transport
oja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118165550 (UPF3B)
03015 mRNA surveillance pathway
118165550 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oja03019
]
118165550 (UPF3B)
Messenger RNA biogenesis [BR:
oja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118165550 (UPF3B)
mRNA cycle factors
P-body specific factors
118165550 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
118165550
NCBI-ProteinID:
XP_035179534
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Position
4:complement(join(14471277..14471423,14472270..14472582,14473277..14473428,14473920..14474108,14474789..14474832,14475520..14475630,14475975..14476073,14477640..14477746,14477832..14477938,14478074..14478244))
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AA seq
479 aa
AA seq
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MKEDKENARPKERRGGPGPAVGAGAGAGAGVGSEGRAGGAELERLERPKDKKEALSKVVI
RRLPPSLTKEQLEEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRFD
GYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYSADDEKLT
STPETLLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERRK
WKEEERRKRKEAEKLKKVDRCPEKERDRSKEEPKIKLLKKPEKDEKDLEKKEKSKKLEKE
TLREEKNASSASAKRSDGETKEEKAKKSEDECVKDYRDRDRDFERDREYERAQREKLRRQ
EEERRRQKERFEKEKVFRRKEEEVKKERDLLREKGKKSDLTDFTSGMDKSEKVTKEDKKE
DTIKRDRIRNKDRPAMQLYQPGARSRSRLCQYEDSAAKPTDQGADKKQESETSNMKEEE
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggagaacgccaggcccaaggagcgccgcggggggcccgggcccgcc
gtcggggccggggccggagccggagccggggtcggctcggagggcagggccggcggcgcc
gagctggagcggctggagcggcccaaggacaagaaggaggcgctgagcaaggtggtgatc
cggcggctgccgcccagcctcaccaaggagcagctggaggagcacctgcagcccctgccc
gagcacgactacttcgagttcttcgccaacgactccagcctgtaccctcacatgttctcg
agagcctacatcaacttcaaaaaccaggaggacatcgtgctcttcagggatcgcttcgac
ggctacgtgttcgttgatcacaaaggtcaggaatatgctgccatagtagagtttgcacct
tttcaaaaagctgcaaaaaagaagagcaagaaaaaggatgccaaaactgggactattgaa
gatgatccagagtacaagaagtttctggaaagttacagtgcagatgatgaaaagttaacc
tccactcctgaaactttgttggaggaaatagaggcaagaaacaaagagctaatagctaaa
aagactactcccttattgaacttcttgaaaaataaacagagactgagagaggagaaaaga
gaggagaggaggaggagagaactggaaagaaaaagacaaagagaagaagaaagaagaaaa
tggaaagaggaggagagaaggaagagaaaagaagcagaaaaactgaagaaagtagacaga
tgtccagaaaaagaaagagacagatcaaaagaagaaccaaagattaagctacttaagaag
cctgaaaaagatgaaaaagacttggagaaaaaagaaaaatccaagaaactggaaaaagag
actctgagggaggaaaaaaatgcgagtagtgcatctgccaaacgatctgatggggagaca
aaagaagagaaggcaaaaaaatcagaagatgagtgtgtaaaggactacagggaccgagat
agagattttgaaagagacagagaatatgagagagcacagagggagaaactgagacgccag
gaagaagagcgtcggaggcagaaagagcgctttgagaaagagaaggtttttagaagaaaa
gaggaagaggtgaaaaaggaaagagacttgctcagagaaaagggaaagaaaagtgatctt
acagactttaccagcggcatggacaaatctgagaaagtaaccaaagaggataaaaaagag
gatacaattaagagggatcgtatcagaaacaaggatcgtccagcaatgcagctgtaccag
ccaggagcccgaagccgaagcagattgtgtcagtacgaagacagtgctgccaagccgaca
gatcagggagcggataagaaacaagagagtgagaccagtaacatgaaggaagaggagtga
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