KEGG   Oxyura jamaicensis (ruddy duck): 118165606
Entry
118165606         CDS       T11549                                 
Symbol
FIP1L1
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
  KO
K14405  pre-mRNA 3'-end-processing factor FIP1
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    118165606 (FIP1L1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oja03019]
    118165606 (FIP1L1)
Messenger RNA biogenesis [BR:oja03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     118165606 (FIP1L1)
SSDB
Other DBs
NCBI-GeneID: 118165606
NCBI-ProteinID: XP_035179648
LinkDB
Position
4:complement(join(68674717..68674864,68675590..68675727,68679667..68679892,68686609..68686664,68688415..68688469,68689042..68689068,68693812..68693835,68694278..68694431,68695463..68695556,68705244..68705353,68708018..68708086,68708373..68708503,68709395..68709502,68709677..68709741,68711932..68712035,68714772..68714829,68717208..68717247,68717837..68717918))
AA seq 562 aa
MSTGEVERLAADLGGGAGDEEEEWLYGDENEAERPEEEKASVPPPPGSEEEAAENGVAKT
KVTEAEDDSDSDSDDDEDDVQVTIGDIKTGAPQYSYGAAPVNLNIKTGGRAYGSSSGVKV
KGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRIR
MGLEILPVTSTTNKITAEDNAMEVTPSAEILDGRYHLFKVQQGRTGNLEKELAVQSTKAD
FTSPPALFKSGIPTNRRLSGTIDVIGQTITISRVEGRRRANENSNIQVLSERSNPEVDNF
TKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPVSLNSWKSGIPITVPPPGFPPP
PGGPPPSLIPTIESGHSSGYDSRSVRAFSYGSVTFPHLAGSAPSWSSLMDSSKQWDYYAR
REKDRERERERSRDRERDRDRDRDRDRERTRDRERDRDHSPTPSVFNSDEERYRYRDYAE
RGYDRHRTSREKDDRHRERRHREKEETRHKSSRSNSRRRHDSEEGDSHRRHKHKKSKRSK
EGKEASSEPAPEQENTEAAPVE
NT seq 1689 nt   +upstreamnt  +downstreamnt
atgtctaccggcgaggtggagcggctggcggcggacctcggcgggggcgccggggacgag
gaggaggagtggctctacggcgatgaaaatgaagcagagagaccagaagaagaaaaagct
agtgttcctcccccacctggaagtgaagaagaagctgcagaaaatggcgttgcgaaaacg
aaggtgaccgaggctgaggatgacagtgatagtgatagtgatgatgatgaagatgatgtt
caagtcaccataggggatattaaaacgggagctccacagtacagttacggagcagctcct
gtgaatctcaatattaagacaggaggacgagcgtatggatcttcttctggtgtaaaagta
aaaggggtggatctagatgcaccagggagtattaatggcgtgccacttctggaagtagat
ttggactcttttgaagataagccttggagaaagccaggggctgatctctctgattacttc
aactatgggttcaatgaagatacctggaaagcttactgtgaaaaacaaaagagaatacga
atgggtcttgaaattttaccagttacctcaaccacaaataaaattacggctgaagacaat
gctatggaagtaacaccaagtgcagagattctcgatggcagataccatctttttaaggta
cagcagggcagaactggaaatttggagaaagagttggcagtgcagtcgaccaaagctgat
ttcacatctcctcctgccttattcaaatcaggaattccaacaaacaggcgattatctggc
acaatagatgtgattggacagaccatcactatcagcagggtggaaggacgacggcgtgct
aatgaaaacagcaacatacaggttctttcagaacgatctaatcctgaagtagacaatttt
accaagccacctccatttttccctccaggagctccacctacccaccttccaccacctcct
ttcctcccaccccctccaactgtcagtactgctccacctctgattcccccaccagtatct
ctgaattcttggaagtctggtataccaataacagtacctccaccaggcttcccaccacca
cctggcggtcctccaccttccctcatacccacgatagaaagtggacattcctctggctat
gacagtcgttctgttcgtgcattttcgtatggcagtgtcacctttccgcaccttgcaggt
tctgctccttcatggtctagtcttatggatagcagcaagcagtgggattactatgcacgg
cgtgagaaggatagggaacgggagagagaacgatctcgagatcgggagcgggaccgggac
cgggaccgagacagagaccgagaacggaccagagacagagaaagggaccgagatcacagt
ccgactccaagtgtgttcaacagtgatgaagaacgatacagatacagagactacgcagaa
agaggctatgaccgccatagaacaagcagagagaaagacgaccgacacagggagaggaga
cacagagagaaagaagagactagacacaagtcatctcgaagtaacagcagacgtcgccat
gacagtgaagaaggggacagccacagaaggcacaaacataaaaaatccaaaagaagcaaa
gaaggaaaagaagccagcagtgagcctgctcctgaacaggaaaacactgaagctgcccct
gtggaatag

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