KEGG   Oxyura jamaicensis (ruddy duck): 118165625
Entry
118165625         CDS       T11549                                 
Symbol
THOC2
Name
(RefSeq) THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03013  Nucleocytoplasmic transport
oja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118165625 (THOC2)
  09122 Translation
   03013 Nucleocytoplasmic transport
    118165625 (THOC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oja03019]
    118165625 (THOC2)
   03041 Spliceosome [BR:oja03041]
    118165625 (THOC2)
Messenger RNA biogenesis [BR:oja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     118165625 (THOC2)
Spliceosome [BR:oja03041]
 Complex C
  Other components
   EJC/TREX
    118165625 (THOC2)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    118165625 (THOC2)
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 118165625
NCBI-ProteinID: XP_035179681
LinkDB
Position
4:join(19952486..19952547,19958250..19958308,19960164..19960255,19961292..19961343,19963487..19963557,19965340..19965461,19966285..19966418,19967940..19968106,19968740..19968832,19970630..19970785,19974511..19974683,19974824..19975019,19978112..19978153,19979984..19980114,19980202..19980303,19981969..19982053,19982875..19982968,19983436..19983516,19983805..19983901,19985722..19985839,19986637..19986816,19987381..19987545,19987896..19988171,19989117..19989258,19991150..19991307,19992675..19992803,19993316..19993447,19993528..19993712,19994449..19994633,19994900..19995002,19995340..19995776,19996631..19996689,19998173..19998208,20001679..20001816,20002162..20002231,20002308..20002465,20003109..20003185,20003297..20003324)
AA seq 1594 aa
MAAAIPAEWIKNWEKAGKNEFLQLCRTLSENKSHDNVGFRDIQQVLYELACHVVRGNLKH
DQASNVLGDVIEFREDMPSILADVFCILDIETSCLEEKSKRDNFTQLVLACLYLVSDTVL
KERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDL
SGNITSDLILENIKSLIGCFNLDPNRVLDIILEVYECRPEYDDFFVPLIESYMYMCEPQT
LCHILGFKFKFYQDPSGETPPSLYRVAAVLLQHNLIDLEDLYVHLLPGDNAIIEEHKREI
VEAKQIVRKLTMVVLSSEKTEEKEKEKEKEEEKTEKPPDNQKLGLLEALLNIGDWQHAQS
IMDQMPPFYATSHKPIAIALCQLLHVTIEPLYRRVGVPKGAKGSPVSSLPNKRAPKQADS
FEDLRKEVFNMLCYLGPHLSHDPILFAKVVRLGKAFMKEFQSDGSKQEDKEKMEILFSCF
LSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQYRYRLYGQWKNETYNSHPLLVKVKA
QTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKY
LTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIELAGLLQY
VANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTK
KSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGGF
LASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKAEKGNKQQ
HKVHKYITACELVMAPVHDAVISLHHPKVWDDISPQFYATFWSLTMYDLAVPHSSYDREV
NKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQLEHVQRVLQRLKLEKDNW
LLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCAHFVELVHQQKTPNFSTLLCYDRVFSD
IIYTVASCTENEASRYGRFLCCMLETVTRWHSDRVIYEKECGNYPGFLTILRATGFDGGN
KADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQA
LERRVHKICQEEKEKRPDLYALAMGYSGQLKSRKPFMIPENEFHHKDPPARNAVAATVQN
GPGGAGMPTSLTINTAKLEESTAEETEKLKEKSQGAVKVINKAVNTTPKVTTSNGNSASN
SKIIKEKDDKEKSGKEKDKEKKEKIPAATPEMKTLGKDGKDKPKEERVNKEDKAREIKEK
TPKSDKEKEKAKKEEKASKEEKSKTVVTTVESKSAAEKEREKEPPREKDVAKDMKSKEIA
KGGEKIPVAGSLKSPVPRSETSECEREQKRRKVDTHSSPSHSSTVKDNLNELKDSSAKHY
INHTTPTLSKSKEREVDKKDLDKSRERSREREKKEEKERKDRKRDHSNSDREVPQDSTKR
RKEENGTTGSSKHSKSESPSDSPRSNEKEKEKSKSKSSGKEKGDSIKAEKMEKSSSGSKK
ESRHDKEKTEKKEKRDSAGGKEEKKHHKSSDKHR
NT seq 4785 nt   +upstreamnt  +downstreamnt
atggcggccgcgatccccgccgagtggataaagaactgggagaaggcgggcaagaacgag
tttttgcaactgtgtcgcactctcagtgaaaacaaaagccatgataatgtcggtttcaga
gatatccaacaggttttgtatgagcttgcatgtcatgttgtcagaggaaacctaaagcat
gatcaagcctctaatgttcttggtgatgttatagaatttcgggaagacatgccttccatc
ttagctgatgtattctgcatattagatattgaaacaagctgtttagaagaaaaaagtaag
agggataattttactcaactggtattagcctgtttgtatcttgtatctgatactgtccta
aaggagcgtttagatccagaaacactagaatcactaggacttatcaagcagtctcaacag
ttcaatcagaaatctgttaaaataaagacaaagcttttttataaacaacaaaaatttaat
ttgttaagagaagagaatgaaggttacgcaaagctgattgcagagctgggacaagactta
tctggaaatatcactagtgatttaatccttgaaaatatcaaatctttaataggatgtttt
aaccttgatcccaacagagttttggatattatcctagaagtctatgagtgcaggcctgag
tatgatgatttctttgtaccactgatagagtcatacatgtacatgtgtgaaccacaaact
ttatgccatatccttgggttcaaattcaaattttatcaggatccaagtggtgaaacgcct
ccttccttatacagagttgctgctgtcttgttgcaacataatctgatagatttggaagat
ctttatgtccatcttcttccaggggataatgccatcattgaagaacacaagcgagaaata
gtggaagctaagcaaattgtcagaaaacttacaatggttgtcttatcctctgaaaagact
gaggaaaaggagaaggaaaaagaaaaagaggaggagaaaactgaaaagccacctgataat
cagaaacttggtttattggaagctttattaaatattggtgattggcagcatgcacaaagt
attatggatcagatgcctccattttatgctacttcacataagcctattgcaattgccctt
tgccagctgttgcatgtgacaattgaacctttgtaccgcagggttggtgtaccaaaaggg
gcaaaagggtcaccagtttcttctttgccaaacaagagagcaccaaaacaagcagacagc
tttgaagacttgagaaaggaagtgttcaacatgctgtgctaccttggtcctcatctctcc
cacgatcccattttatttgctaaagtggtgcgccttggaaaagcatttatgaaagagttt
cagtctgatggaagtaagcaagaagataaagagaaaatggagatactgtttagctgtttt
ctgagtattaccgatcaagttttgcttccatctctttctttgatggactgcaatgcatgc
atgtctgaggaattatggggaatgttcaaaacatttccttaccagtaccggtaccgtctt
tatggacaatggaagaacgaaacctacaatagtcatccgcttctagtgaaagttaaagct
caaaccatagaccgagccaaatatattatgaagcgtctgactaaagaaaatgtgaaacca
tctggaagacaaattggaaagctcagccacagcaatcctacgattttatttgattatatt
ttatcacaaatacaaaaatacgataacttaataaccccagttgttgattcactgaaatac
ctcacttcactgaattacgatgtcttggcatactgtatcattgaagcactggcaaatccc
gagaaggagagaatgaaacatgatgacactactatttcaagctggcttcagagtctggct
agcttttgtggtgctgttttcagaaaatacccaattgaacttgctggtctacttcaatat
gtagccaaccaactgaaagctgggaaaagctttgatttgcttattttaaaagaggtagta
caaaaaatggcagggatagaaattacagaagaaatgacgatggagcaattggaagccatg
actggtggagaacaactaaaagctgagggtggatactttggtcaaatcaggaatacaaaa
aaatcctctcagagattgaaagacgcattattggaccatgaccttgcccttccactgtgc
ctgcttatggctcagcagagaaatggtgtgatctttcaagagggaggggaaaaacatctg
aagctggtgggaaaactgtatgaccagtgccatgacaccctggtacaatttggtgggttt
ctagcatccaatctaagcacagaggattacattaagcgagtgccttcaattgacgttctc
tgtaatgaatttcacacacctcatgacgctgcgtttttcctctcgagacctatgtatgca
caccatatttcatccaagtatgatgaactaaaaaaagctgaaaagggaaataaacagcag
cacaaggttcacaaatatattacagcatgtgagctggtaatggcacctgttcatgatgct
gtgatctctctgcaccatcccaaggtctgggatgatatcagtcctcagttctatgctaca
ttctggtctttgacaatgtatgaccttgctgtcccacatagtagctacgatagagaagtc
aataaacttaaagtccagatgaaagccatagatgacaatcaggaaatgcctccaaataaa
aagaaaaaagaaaaagaacgttgcacagctcttcaagacaagctccttgaagaggagaag
aagcagttggagcatgtgcaaagggttctacagagactgaaactggagaaggataactgg
cttctggcaaagtctaccaaaaatgagactatcacaaaatttttgcagttatgtatattt
cctcgctgcattttttcggcaatcgatgcagtttattgtgctcactttgtagaactggtg
catcagcagaaaacacccaacttctccacacttctctgctatgacagagttttctctgat
attatatatacagtagcaagttgcactgaaaatgaagctagtagatatggcaggttttta
tgctgtatgctggagactgtgactagatggcacagtgacagagtcatatatgaaaaggaa
tgtggcaactatccaggcttcctaaccatattacgggcaactggatttgatggtggaaat
aaagctgatcaattggattatgagaattttagacatgtggtacacaaatggcactataag
ttaactaaggcttctgtacactgccttgaaacaggtgaatatacgcatatcagaaacatc
ctgattgtgctgaccaaaatcctcccatggtatccaaaagtgttgaacctgggccaagcc
ttggaaagaagagtacataagatatgtcaggaagagaaagagaagagacctgatctatat
gcattggctatgggctattctgggcagctgaaaagtaggaagcctttcatgatacctgaa
aatgaattccaccacaaagacccacctgccaggaatgctgtagctgcaacagtacaaaat
gggccaggtggtgctgggatgcctacatctctcacaataaacacagctaaactggaggaa
agcactgctgaagagactgaaaaactaaaggagaagtctcagggtgctgtgaaagttatt
aataaagctgtcaacactacaccgaaggtgacaacaagcaatggaaacagtgcttctaat
agcaaaattattaaggagaaagatgataaagaaaaaagtgggaaggaaaaagataaagaa
aaaaaagaaaagattccagctgccactccagagatgaaaacacttgggaaggatgggaaa
gacaaacctaaggaagaacgggtgaacaaagaagataaagcaagagagatcaaggagaaa
acaccaaaatctgacaaggagaaggaaaaagccaagaaagaagaaaaagcttcaaaggaa
gaaaaatccaagacagttgttaccactgtcgagtcaaagtcagctgcagaaaaggagaga
gaaaaggagccacccagagaaaaagatgtagccaaggatatgaaatcaaaggaaattgct
aaaggcggagaaaagattccagtagctgggtccttgaagtctcctgttccccgatcagaa
acatcagaatgtgagagggaacaaaaacgccgcaaagttgatacccattcttctccatca
cattcctcaacagtaaaggacaacctcaacgaactcaaggattcttcagcaaagcactac
attaaccacactactccaacattgtccaagagtaaagagagagaagtggacaagaaagat
ttggacaaatcaagggaaagatccagagagagagagaagaaagaggaaaaggaaaggaaa
gaccgaaaaagggatcattcaaacagcgaccgagaggtaccacaggattcaactaaacga
cgcaaagaggaaaatgggacaactggatcttcaaaacatagcaaaagtgaaagtccttct
gattctcctcgctcaaatgaaaaagagaaggagaagagcaaatcaaaatcttcaggaaag
gaaaaaggtgattcaatcaaagcagaaaagatggagaagagctcctctggtagcaaaaag
gaatcaagacatgataaagaaaaaacagaaaagaaagaaaaacgagacagtgctggaggg
aaagaagagaagaaacatcataaatcttcagacaagcacagataa

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