KEGG   Oxyura jamaicensis (ruddy duck): 118166059
Entry
118166059         CDS       T11549                                 
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja04382  Cornified envelope formation
oja04510  Focal adhesion
oja04512  ECM-receptor interaction
oja04518  Integrin signaling
oja04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oja00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    118166059 (COL4A5)
   04518 Integrin signaling
    118166059 (COL4A5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    118166059 (COL4A5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    118166059 (COL4A5)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    118166059 (COL4A5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oja04147]
    118166059 (COL4A5)
   00536 Glycosaminoglycan binding proteins [BR:oja00536]
    118166059 (COL4A5)
Exosome [BR:oja04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   118166059 (COL4A5)
Glycosaminoglycan binding proteins [BR:oja00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   118166059 (COL4A5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 118166059
NCBI-ProteinID: XP_035180526
LinkDB
Position
4:complement(join(18058099..18058180,18059656..18059828,18060192..18060306,18060854..18061031,18061374..18061586,18062886..18062984,18063248..18063376,18063749..18063820,18063969..18064041,18064455..18064588,18065903..18065911,18068184..18068192,18070015..18070200,18071021..18071071,18071647..18071745,18072294..18072374,18073676..18073802,18075398..18075537,18076281..18076370,18077335..18077433,18078660..18078809,18079615..18079704,18080619..18080786,18081463..18081471,18084399..18084512,18085129..18085279,18085483..18085580,18086186..18086290,18086381..18086473,18087173..18087341,18087793..18087984,18088191..18088261,18088840..18088932,18090197..18090280,18091415..18091588,18092436..18092568,18093050..18093091,18093265..18093318,18093439..18093483,18095585..18095641,18095750..18095803,18098019..18098111,18098220..18098261,18098369..18098404,18098890..18098952,18099988..18100068,18101312..18101338,18102986..18103039,18103810..18103872,18103978..18104022,18104719..18104763,18106014..18106103,18115677..18115736,18141671..18141763))
AA seq 1698 aa
MELRWRSRSSAAGCLVVLLLGCWRLDEAAAAACHGCTSLSKCDCSGVKGEKGERGFPGLE
GQPGLPGFPGPEGPPGPRGPKGDDGLPGPIGPKGIRGPPGLPGFPGTPGLPGLPGQDGPP
GPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGEAGEIITSLLPGQKGDPGFP
GLPGIPGPPGSTGIPGPVGPPGPPGLTGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQG
PPGPPGQIGEQKRPNDIEFQKGDQGIPGDPGPPGLPGPQGPPGLPGGVKGEKGEQGEPGK
RGKPGKDGEPGQPGRDGLPGGPGVNGAPGRDGEKGEKGDTGPPGPPGSVISRPGIDATVG
PKGSKGLPGLPGAKGERGFSGRPGPPGLPGSPGVTTVGPPGPPGLPGERGQKGDPGLPGV
SIPGQPGLDGPQGPPGPPGPPGPPAPSVPPGERLCEQGPPGPPGIPGQQGFTGERGQKGD
QGDTCFNCIGTGISGPPGERGPPGPPGSPGSPGFPGPKGEKGLPGLTGLVGPPGFPGPPG
APGRPGPKGDPGDVLTSPKMKGDKGDPGFPGPPGLPGIDGTPGRDGLPGPPGPKGEPGSV
AFKGEMGIPGDPGIPGLPGDKGLPGPPGFGPQGSPGEKGIQGVSGRPGPPGVPGPKGEPG
QTITEPGVPGPPGPPGRNGDPGLPGDPGQPGQRGLSGIPGAKGEPGIPGIGLPGPPGPKG
FPGTPGPPGAPGTPGRPGLDGPPGPPGFPGQKGDRGFGVPGPPGPPGPPGIKGVQGPKGD
PGFPGNPGLPGRAGFDGTPGPKGDPGPSGPPGLPGPPGIPGIGGQGPPGPPGPPGPVGPP
GSPGLQGVPGEKGDPGPPGFDVPGPPGDQGTPGYPGPPGLPGPQGSPGPPGRDGIPGFPG
AKGEMGVMGAPGPPGPPGTPGRNGLPGSKGNNGLPGPPGPPGPVGQKGVKGEAGLPGPPG
KIDPKQLGAKGEKGEPGVPGIPGLSGQKGYQGLQGDPGPPGLSGPPGAPGLPGIKGDTGL
PGQPGPTGPPGLKGAMGEMGLPGPPGIKGSQGIAGRPGQPGPAGFPGLKGEKGDPGLSSI
GIPGLPGPKGDLGLPGYPGSPGSKGVAGNPGLPGLPGNPGAKGEPGLPGFPGTPGIPGPK
GIEGPPGNPGLPGPPGPVGDIGRPGPPGPPGEKGQPGRDGIPGPAGQKGEPGLPGFGRPG
PPGLPGLSGQKGELGLPGPPGPPGLPGLKGEPGFQGFPGLQGPPGPPGLPGPPLEGPKGS
PGPPGVPGRPGPSGPPGSPGPEGLRGPPGSGGLKGEKGNPGQPGPPGLTGQKGDQGPPGR
QGDPGRPGLNGMKGDPGVPGVPGFPGMKGPTGPAGPAGLTGSQGLPGPPGPPGLPGTIGR
SIVVKGDPGPPGPPGQPGSKGPPGLPGPQGLPGPIGVPGDPGRDGLPGFDGPAGRKGERG
LPGQPGSRGIQGPPGPDGLQGPPGPPGTASVAHGFLITRHSQTRDTPLCPQGTSRIYDGF
SLLYVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPM
SMEPLTGQSIQPFISRCVVCEAPAMVIAVHSQTIQIPSCPPGWDSLWIGYSFMMHTSAGA
EGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEVSEMFSKPQSETLK
AGDLRTRISRCQVCMKKT
NT seq 5097 nt   +upstreamnt  +downstreamnt
atggagctgcggtggcggagccgcagctcagccgctgggtgcttggtggtgctgctcttg
gggtgctggcggctggacgaggcggcggcggcggcttgccacgggtgtacgtctttatcc
aaatgtgattgcagtggagttaaaggtgaaaagggtgaaaggggattcccgggcttggaa
ggccagccaggtttgcctggatttccaggaccggaagggcctcctggtcccagaggtcca
aagggtgatgatggtcttccaggacctattggacccaaaggaattagaggaccaccaggg
cttccaggatttccaggaacaccaggacttcctggattaccaggacaagatgggccacca
ggacctcagggtatcccaggctgcaatggaactaagggagagcgtggattcccaggcagt
ccaggttttcctggcttacaagggcctcctggacctcctggcctgccaggtatgaagggt
gaagcaggtgaaataattacatctttgctgccaggacagaagggcgacccaggttttcca
ggtcttccagggatacctggcccacctggctccacaggaataccaggtccagttggccct
ccagggcccccaggtttgacgggacctcctggtccaccagggctaccaggacctaagggt
aatatgggcttgaatttccaaggacccaaaggtgaaaaaggtgaacaaggtcttcaggga
cctccagggccaccaggacaaattggagaacagaagagaccaaatgacattgagtttcag
aaaggagatcagggaattccaggtgatccaggcccaccaggacttcctgggccacaaggc
cctcctggtcttcccggtggcgtaaaaggtgaaaaaggtgagcaaggagaaccaggcaaa
agaggaaagcctggcaaagatggagaacctggtcagcctggtagggatggtttacctggt
gggcctggagttaatggtgctccaggaagagatggtgaaaagggtgaaaaaggtgacact
ggtcctcccggtccccctggaagtgtcatttcaagaccaggcattgatgcaacagtggga
ccaaaaggtagcaaaggattgccaggactcccaggagccaaaggggagcgtggattctct
ggtaggccaggcccacccggcttgccaggttctccaggggtcactactgttgggcctcct
ggcccacctggcttacctggtgagagaggacagaagggagatccaggtttacctggtgtt
tccattcctggacagcctggacttgatggaccacagggacctccaggacctccaggtcct
ccgggaccacctgcaccgtctgttcctcctggtgaaaggttatgtgagcaggggccacca
ggtcctccaggaattccaggacaacaaggctttacaggggaacgaggccaaaaaggtgat
caaggagacacatgcttcaattgtataggaaccggaatatctgggcctcctggggagaga
ggaccaccaggacctccaggtagtccaggttctcctggttttcctggaccaaaaggtgaa
aaggggcttccaggattaactggccttgtagggccaccaggattcccagggcccccaggt
gctcctggaagacctggtcctaaaggagacccaggggatgtcctgacttctccaaaaatg
aaaggcgacaaaggagaccctggcttcccaggacctccaggtcttcctggcatagatggt
actcctggacgagatggactgccaggtccgcctggccctaagggggaacccggcagtgtt
gcatttaaaggagaaatgggaattccaggtgacccaggaataccaggtcttcctggagac
aaaggacttcctggacctcctggttttggtccacaaggctcacctggtgaaaagggcatc
caaggtgtatcaggtcgcccagggcctcctggagttcctggtccgaaaggtgaacctggt
cagactattacagaaccaggagttcctggcccccctggtcctccaggaagaaatggtgac
ccaggtcttccaggggatcctggtcagccaggtcagcgagggttgtcaggcatcccaggt
gcaaaaggagagccaggtattcctggcatcgggcttccagggccaccaggcccaaaaggt
ttcccaggaacaccaggcccccccggagctccaggaactccaggtcgacctggtctagat
ggaccccctgggccacctggtttcccaggccagaagggggatcgtggatttggagttcca
ggaccacctggacccccaggaccaccgggcataaaaggagttcaaggacccaaaggtgat
cctggcttcccaggaaaccctggtcttccaggacgggcaggttttgatggaactccaggg
ccgaaaggtgaccctggaccaagcggaccaccaggactcccaggcccaccgggcatccct
ggcatcggaggacaaggtccacctggacctccaggacctccaggtcctgttggcccacca
ggttccccagggttgcaaggcgttccaggtgagaaaggagatccaggtcctccaggcttt
gatgttcctggtcctccaggtgaccaaggaaccccaggctatccaggaccccctggtctc
ccaggacctcagggttcacctggaccaccgggccgggatggcattcctggatttccaggt
gccaaaggtgagatgggcgtcatgggagccccggggcctccagggcccccaggaactcct
ggaagaaatggccttcctggctcaaaaggtaataatggattacctggcccacctgggcct
cctggaccagtaggacagaaaggcgtcaaaggtgaagcaggcctgccaggtccacctgga
aaaattgatccaaaacagctaggagcaaaaggagaaaaaggcgagccaggtgttccaggt
attcctggtctatcagggcagaaaggttatcaaggtctccaaggcgacccaggaccacca
ggacttagtggtcccccaggtgcaccagggttgccaggcatcaaaggagacacagggctt
cctgggcagccaggaccaacaggacctccagggttaaaaggtgccatgggagagatgggc
cttccaggtcccccagggattaaaggcagccagggaatagcaggacgtccagggcagcct
gggcctgctggatttcctggattgaaaggggagaaaggtgaccctggactttcaagcatt
ggtattcctggtctccctggaccaaagggtgatcttggtttgcctggatacccaggtagt
ccaggcagtaaaggtgtagctggaaatcctggtttgcctggactgccaggcaatccaggt
gcaaaaggagagccaggccttcctggattcccaggcacgccaggaattccaggaccaaaa
ggtatcgaggggcctccaggtaaccctggtctgcctggaccacctgggccagtaggtgat
attggtcgtcctggccctcctggtcctccaggggaaaagggtcagcctggtcgagacggc
atccctggaccagctggtcagaagggcgagccaggtctaccaggttttgggcgcccagga
cctccaggactcccaggattatcagggcaaaaaggtgaactggggttacctggcccacca
ggaccacctggacttccaggtctgaagggagaaccaggtttccaaggattccctggccta
cagggcccaccgggtccaccgggattaccagggccacctctggaaggtcctaaaggtagc
cctggcccaccaggtgttccaggaagaccaggtccctcaggtcctccaggttcgccaggc
ccagaaggtctgcgggggccaccgggcagtggaggacttaaaggggaaaaagggaaccca
ggacagcctggcccacctggcctgactggtcaaaagggagatcaaggaccacctggacgc
cagggggatcctggtcgtcctggtctgaatggaatgaagggcgatcccggggttccaggc
gttccaggattcccaggtatgaagggtcccactggacctgcaggacctgctggcctcaca
ggcagtcaaggattaccaggcccaccaggtcccccaggtttaccaggtaccattggacga
agcattgttgtcaaaggtgaccctggtcccccaggtcctccaggacagcctgggtcaaaa
gggccacccggattgccaggaccacagggattgccaggtccaattggtgtacctggtgat
ccaggcagagatggtctccctggttttgatggtccagcaggacgtaaaggagagagaggt
cttccaggccaaccaggttcacgaggaatacagggcccccctggtcctgatggcttacaa
ggcccacctgggcctcccggaacagcctctgttgctcatggattccttataactcggcac
agccagactagagatacaccactttgtccacaaggaacgtcaagaatatatgatggattc
tctcttttatatgtgcaaggaaatgagagagctcacggccaggatttgggtactgctggg
agctgccttagacgttttagcaccatgcccttcatgttctgcaacatcaacaacgtttgt
aattttgcatcaaggaatgactattcctactggctatcaactccagagccaatgccaatg
agcatggagccactgactgggcagagcattcagccattcattagccggtgtgttgtgtgt
gaagctcctgctatggtgatagctgtccacagtcagaccattcagattccttcgtgtcct
ccaggctgggactccctttggatcggttactcttttatgatgcacactagtgctggagca
gaaggctctggacaggccttggcgtcgcctggatcctgtttagaagaattccgctcagct
ccattcatcgagtgccatggtcgtggcacttgtaactactacgccaattcatacagtttc
tggctggcgactgttgaagtgtcagaaatgttcagtaaacctcagtcagagacactgaaa
gctggagacttgaggacgcgtattagtcgttgtcaagtttgcatgaagaagacgtaa

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