Oxyura jamaicensis (ruddy duck): 118166224
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Entry
118166224 CDS
T11549
Symbol
PCDH7
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-7
KO
K16498
protocadherin delta 1
Organism
oja Oxyura jamaicensis (ruddy duck)
Pathway
oja03273
Virion - Lassa virus and SFTS virus
oja04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118166224 (PCDH7)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
118166224 (PCDH7)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oja01009
]
118166224 (PCDH7)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oja04515
]
118166224 (PCDH7)
Protein phosphatases and associated proteins [BR:
oja01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118166224 (PCDH7)
Cell adhesion molecules [BR:
oja04515
]
Cadherins
Protocadherins
118166224 (PCDH7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Ig_CLSTN
Cadherin_FAT4_N
Cadherin_2
Cadherin_CELSR2_9th
Mid2
TMEM154
LYRIC
Motif
Other DBs
NCBI-GeneID:
118166224
NCBI-ProteinID:
XP_035180858
LinkDB
All DBs
Position
4:complement(join(75254340..75254719,75393160..75393376,75477401..75477460,75528346..75530905,75530907..75531550))
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AA seq
1287 aa
AA seq
DB search
MRKMRTLLGFVHCCCCCFLLLLPPPLLVSLAAAKQLLRYRLAEEGPADIRIGNVAADLGI
VTGSGEVTFSLESGSDYLKIDNMTGELSTTERRIDREKLPQCQMIFDENECFLDFEVSVI
GPSQSWVDLFEGRVIILDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGI
ERYELLQEPGGDGGRRGGGGGGGGGGGGGGGGIGAXTGSESALYPGGSKRRQEADAAARS
SVFELQVADTLDGEKQPQLIVKGALDREQRDSYELSLRVRDGGDPARSSQAILRVLITDV
NDNSPRFEKSVYEADLAENSSPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD
ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIRDENDNVPTIDIRKIG
RIPLRDGVASVAEDVLVDTPIALVQVSDRDQGENGVVTCTVVGDVPFQLKPASEGEGEPQ
NKRKYFLHTSAPLDYEAVRDYNVVIVAVDSGSPSLSSNNSLLVRVADTNDNPPVFGQAVL
EVSFPENNLPGERVATVVATDADSGKNAELTYSLEPSPLSSETPGGIFSIDPDSGDVSVQ
AVLDREQRDTYEFQVTARDKGVPSLQGSTTVVVRVADRNDNEPRFMQDVFTFYVKENLQP
NSPVGMVTVMDFDKGRNAELSLSIQPGEHDQAAGIFSIENDTGTIYSTVSFDREQQTSYT
FKVKAVDGGEPPRSATATVSLFVMDENDNAPAVTFPSNSSYTVLPPSSNMRTVVATVVAT
DADTGLNADLNYSIIGGNPFKLFEIDPSSGVVSLVGKLAPKHYGLHRLVVQVNDSGQPPQ
STTALLHVFVNESLSNATVVESQVARSLHTPLAQDIAGDPSYELSKQRLSIVIGVVAGIM
TVILLILVVVMARYCRSKGKHGYEAGKKDHEDFFTPQQHDKAKKPKKDKKVKKGKQPLYS
SIVTVEASKPNGQRYDSVNEKLSDSPGMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHP
QSPTAGKKHQAVQDLPPANTFVGAGDNISIGSDHCSEYSCQASSKYGKQVDTMQTTQHPG
HIEESCKMNPFRRVTFSVVSQPQDPHQGSLQSCYDSGLEESETPSSKSSSGPRLGALPLP
EDNYERTTPDGSVGEAEHMENDSRPLPDVALTGKCTRECDEYGHSDSCWMPVRTSPERKQ
KSQPKLSTFMPVDERGSQEKLANGEASLMGDRNRNLLNKKLTSSYETFSAASFSKKEEGN
PEDIPLTQTGEYKPSPVNTLTRREVYL
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagatgcggactctccttggctttgtgcattgctgctgctgctgcttcttgctc
ctcctgcctccgccgctcttggtcagccttgcagcggccaagcagctcctgaggtaccga
ctggccgaggagggaccagccgacatccgcatcggcaacgtggctgccgacctggggatc
gtgacgggctccggagaggtgacattcagcctggaatcgggctccgactacctcaagatc
gataacatgaccggggagctgagcaccacggagcggcgcatcgaccgcgagaagctgccg
cagtgccagatgatcttcgacgagaacgagtgcttcctagacttcgaggtgtcggtcatc
ggcccgtcgcagagctgggtggacctcttcgagggccgggtcatcatcctggacatcaac
gacaacacccccaccttcccttcccctgtcctcacgctcaccgtggaggagaaccggccc
gtggggaccctttacctgctccccaccgccaccgacagggacttcggccgcaatggcatc
gagcgctacgagctgctgcaggagcccggcggggacgggggacggcgcggtggcggtggt
ggcggaggcggcggcgggggcggcggcgggggggggatcggtgccaccggctcggagagc
gccctctaccccggcggcagcaagcggaggcaggaggcggatgcggcggcccgcagcagc
gtgttcgagctgcaggtggccgacaccctagacggggagaagcagccgcagctgatcgtc
aagggggcgctggaccgcgagcagcgggactcctatgagctgagcctccgcgtgcgggac
ggcggcgacccggcgcgctcgtcgcaggccatcctgcgggtgctgatcaccgacgtgaac
gacaacagcccccgcttcgagaaaagcgtctacgaggcggacctggccgagaacagcagc
cccgggacccccatcctgcagttgcgagccgccgacctggacgtgggggtgaacgggcag
atcgagtacgtcttcggggcggccaccgagtccgttaggcgcctgctgcggctggacgag
acctcgggctggctcagcgtcttgcatcgcatcgaccgggaggaggtgaaccagcttcgc
ttcaccgtgatggcccgcgaccgcgggcagccccccaagacggacaaggccacggtggtg
ctgaacatccgcgacgagaacgacaacgtgcccaccatcgacatccggaaaatcgggcgc
atcccgctgcgggacggggtagccagcgtggccgaggacgtcctggtagacacccccatc
gccctagtgcaggtgtcggaccgggaccagggtgaaaacggcgtggtgacctgcaccgtg
gtgggcgacgtgcccttccagctcaagccggccagcgagggcgaaggggagccgcagaac
aagcgcaagtatttcctccacacttcggcccctctggactacgaggcagtccgcgactac
aacgtggtcatcgtggccgtggactcgggcagccccagcctgtccagcaacaactctttg
ctggtgcgggtcgccgacaccaacgacaaccctcccgtgttcggccaggccgtgctggag
gtctccttcccggagaacaacctgcccggtgagagggtggccacggtggtggccacggat
gcggacagtggcaagaacgccgagctcacctactccctggagccctcgcccctctcctcg
gagacgccgggtggcatcttcagcatcgaccccgactctggggacgtgtcggtgcaggcg
gtgctggaccgcgagcagcgcgacacctacgagttccaggtgacggcccgggacaaggga
gtgccgtcgctgcagggctccaccacggtggtggtgcgggtggccgaccgcaacgacaac
gagccgcgcttcatgcaggatgtgttcactttctacgtgaaggagaacctgcagcccaac
agccccgtgggcatggtgaccgtgatggacttcgacaaggggcgcaacgccgagctcagc
ctctccatccagcccggcgagcacgaccaggcagctggcatcttctccatcgagaacgac
acgggaaccatctactccaccgtctccttcgaccgggagcagcagaccagctacaccttc
aaagtgaaggcggtggacgggggcgagccgccgcgctcggccaccgctaccgtgtccctc
ttcgtgatggacgagaacgacaatgcgcccgccgtcaccttccccagcaacagctcctac
accgtgctgccgccctccagcaacatgcgcactgtggtggccacagtggtggccaccgac
gccgacactggcctcaacgccgacctcaactacagcattatcgggggcaaccccttcaag
ctcttcgaaatcgacccgtccagcggcgtggtgtcgctggtgggcaagctggcccccaag
cactacggcctgcaccgcctcgtggtgcaggtgaatgacagcgggcagccgccccagtcc
acaactgccctgctccacgtctttgtcaacgagagcctgtccaacgccaccgtggtggag
agccaggtggcccgcagcctccacacgcctctggcccaggacatcgccggcgaccccagc
tatgagctgagcaagcagcggcttagcatcgtcatcggtgtggtggccggtatcatgaca
gtcatcctcctcatcctggtggtggtcatggcccgctactgccgctccaagggcaaacat
ggctacgaggccggcaagaaggaccacgaggacttcttcacccctcagcagcacgacaag
gccaagaagcccaagaaggacaagaaagtcaagaagggcaagcagcccctctacagcagc
atcgtcaccgtcgaggcctccaagcccaacgggcagcgctacgacagcgtcaacgaaaag
ctctcggacagccccggcatggggcgctaccgctcggtcaacgggggcccgggcagcccc
gacctggccaggcactacaagtccagttcgccgctgcccaccgtccagctgcacccccag
tcccccaccgccggcaaaaagcatcaggccgtgcaggacctgcccccggccaacaccttc
gtgggcgccggcgacaacatctccatcggctcggaccactgctccgagtacagctgccag
gccagcagcaagtacggcaagcaggtggatacaatgcagactacgcagcaccctggccac
attgaggaatcatgtaaaatgaatccatttcgtagagtgacgttttctgttgtgagtcag
cctcaggacccacatcaagggtcattgcagagttgctatgacagcggtctggaggagtca
gaaacaccaagcagtaagagttcatcagggccaagactgggtgcccttccactcccagag
gacaactacgaaaggactacgccggatggcagtgttggtgaggcagagcatatggaaaat
gattcaaggcctctgccagatgtagccctgacagggaagtgtacccgagaatgtgatgaa
tatggccactcggactcctgctggatgccagttcgcacttctcctgaaaggaagcagaag
agccagccaaaactctccactttcatgcctgttgatgaacggggcagtcaggaaaagctg
gccaatggagaagcttccctcatgggtgatcgcaacagaaacctccttaacaaaaagttg
acgtcatcctatgagaccttcagcgcggctagtttcagcaaaaaagaagaaggcaatcca
gaggatatcccccttacacagacaggggaatacaagccatctcctgtcaatactctaact
agaagagaagtttacctgtag
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