KEGG   Oxyura jamaicensis (ruddy duck): 118166321
Entry
118166321         CDS       T11549                                 
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
  KO
K14327  regulator of nonsense transcripts 2
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03013  Nucleocytoplasmic transport
oja03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    118166321 (UPF2)
   03015 mRNA surveillance pathway
    118166321 (UPF2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oja03019]
    118166321 (UPF2)
Messenger RNA biogenesis [BR:oja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     118166321 (UPF2)
   mRNA cycle factors
    P-body specific factors
     118166321 (UPF2)
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 118166321
NCBI-ProteinID: XP_035181040
LinkDB
Position
1:complement(join(5764301..5764310,5770547..5770667,5774390..5774531,5779149..5779316,5780034..5780132,5781431..5781535,5782894..5783033,5786841..5787024,5788165..5788440,5788990..5789193,5789721..5789906,5795022..5795138,5796313..5796426,5797694..5797802,5803294..5803379,5803883..5803986,5806489..5806551,5808600..5808749,5810567..5810764,5811729..5811889,5816482..5817261,5818275..5818636))
AA seq 1292 aa
MPAERKKSASMDEKESSLNNKEKEFGERRPVSTREKPKEDVKVGVKRETLKVPEDKKKKL
EEDKRKKEDKERKKKDDDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEVKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADILD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQSKDSSKDESRDSKDAKDNKDAPGSEDLELELENLDINDDPLELDCGDEAE
DLTKKLLDEQGKREGADSTGADSSDGKQAERKQEDEEASTGSHLKLIVDAFLQQLPNCVN
RDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDL
CSMLKGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHI
EMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPA
EKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVK
YNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYN
YRMVESAVIFRTLYSFTSFGVNPDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKR
KLDCFLVYFQRYVWWKKSLDVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAIRQV
QDLEREFLIKLGLVNDKDSKDSITEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEG
SDNEEEEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKM
MLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGSGEGESESGDTMPFVMLTRKGNK
QQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPA
PANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq 3879 nt   +upstreamnt  +downstreamnt
atgccagctgagcgcaaaaagtcagcaagcatggatgaaaaagaatcttcgttgaataat
aaagaaaaggaatttggtgaaaggcgaccagtgagcactagggagaagccaaaagaagat
gtcaaggttggagtgaagagagagactttaaaggttcctgaagataaaaagaaaaaactg
gaagaggataaaagaaaaaaagaagacaaggagcggaagaagaaagatgatgataaagtg
aaggcagaagaagagcaaaagaagaaagaagaggaagaaaaaaagaaacttgaagaggaa
gagaaaaagaagcaagaggaggaagtgaaacgtcagcaagaagaagcagctgctcagctg
aaagaaaaagaggaagcacatcagctccatcaggaggcttgggagcgccatcaggcaaga
aaagagcttcgcagcaaaaaccagaatgcaccagacaatcgccccgaggagaacttcttc
agcagactagactccagtctgaagaagaacacggcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccatgattttaatagcctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaagccaaactgaaaatctcggatgtgaactgc
gctgtgcacttgtgttccctcttccaccagcgctatgctgattttgctccctcattactt
caggcttggaaaaaacattttgaagcgaggaaagaagagaagactcccaacattactaag
ctgagaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtttgtctttaatctatgagcagcttaaaaatattattaacgctgaccgagagtcc
cacactcatgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggt
ttggtaccaaggaaagtaaaaactgttgcagagaagtttaatttgagctttcctcctagt
gagataattagtccagagaaacaacagcccttccagaatttgttgaaggaatactttacg
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
aggcgcatccttcactccaaaggagaactgagtgaagatcgacacaagcagtatgaggaa
tttgcaatgtcatatcagaagctgttggccaattctcagtctctagccgatattctggat
gagaatatgcctgaccttccccaagacaaaccaacacctgaggaacatggacctggtatt
gacattttcacaccaggaaagcctggagaatatgacctggaagggggtatttgggaagat
gaagatgctagaaacttctatgagaacctcatcgacttgaaggcttttgtgcctgcaatc
ttgtttaaagataatgaaaaatgttcccagagcaaggattccagcaaggacgaatcaaga
gattcaaaagatgccaaagataataaggatgcacctgggagtgaggatttggaattggag
ctggagaatttggatattaatgacgatcccctggaattagactgtggagatgaggcggaa
gatcttacaaaaaagcttcttgatgaacaaggcaagagagagggagcagatagcaccgga
gctgacagtagtgacggaaaacaagctgaaagaaaacaagaagatgaagaagccagtact
ggatctcatttaaaacttatagtagatgcttttcttcagcagcttccaaactgtgtcaac
agagacctcatagacaaggcagccatggatttttgcatgaatatgaatacaaaagctaac
agaagaaaactagtgcgagcccttttcatagttcctaggcaaaggttggatttgctaccg
ttctatgcgaggctggttgccacgttgcatccctgtatgtctgatgtagcagaggatctt
tgttccatgctgaaaggggatttcagatttcatgtaagaaaaaaggaccagatcaacatt
gaaacaaagaataaaactgtgagatttattggtgagcttaccaagtttaagatgttctcc
aaaaatgatactctccactgtttaaagatgcttctgtcagacttctctcatcaccacatt
gagatggcatgtactctgttggaaacctgtggtaggttcctcttcaggtcaccggaatct
cacttgagaaccagcgttcttttggaacaaatgatgagaaagaaacaagcaatgcatctt
gacgcccgctatgttacaatggtggaaaatgcctactactactgtaatccccctccagct
gaaaaaactgtgaagaaaaaacgtcctcccttgcaggaatatattcgtaagcttctctac
aaggatctctcaaaggtcaccacagagaaggtcctgagacagatgcgcaagctgccttgg
caggatgcagaagtaaaagattatgttatatgctgcatgatcaacatctggaatgtgaaa
tataatagtattcactgtgtagccaacctcctagcagggttggtcctttaccaggaagat
gttggaattcatgttgtggatggagtactagaggatattcgactaggaatggaggttaac
cagccaaagtttaaccagcggcggatcagcagtgccaagtttttgggggagctttacaat
tatcgaatggtggaatcggctgtaatatttcgaactctatattcattcacatcatttggt
gtgaatcctgatggtagtcctagtccactggatcccccagagcatcttttcagaatcaga
ctagtctgtacgatccttgatacctgcgggcaatattttgacagaggatccagcaaacga
aagcttgattgcttccttgtatacttccagcggtatgtttggtggaaaaaaagcctagat
gtctggacaaaagaccacccgtttcctatagacattgactatatgatcagtgatacactg
gaactcctgagaccaaagataaagctctgcaattctctggaagaagctatcagacaggtt
caagacttggaaagagaattcttaataaaattagggcttgtgaatgacaaagattccaaa
gattccattacagaaggagagaatctggaagaggacgaagaagaagaagaaggtggagca
gagacagaggaacaatccggaaatgaaagtgaagtaaatgagccagaagaggaggagggt
tctgacaatgaggaagaagaaggtgaagaagaagaagaagaaaacactgattatcttaca
gactccaataaggaaaatgaaactgatgaggagaatacagaagtaatgattaaaggagga
ggacttaagcatgtcccttgtgcagaagatgaggacttcatccaggcattggataaaatg
atgctggaaaatcttcagcaacggagtggcgaatcagttaaagtacatcagttggatgtt
gctattcccctacatctcaaaagtcagctgaagaagggtcctccacttggaagtggagaa
ggggagtcagagtctggagacacaatgccgtttgtcatgttaacacgaaaaggcaacaaa
cagcagtttaagatcttgaatgtaccaatgtcttcccaacttgctgcaaaccactggaac
caacagcaggctgaacaggaggagagaatgcggatgaaaaagctcactttggatatcaat
gagcggcaagaacaagaggactaccaggaaatgttgcagtctctggcacagcgtccagct
ccagcaaatacaaaccgtgaacggcgtcctcgttaccagcatccaaagggagcacctaat
gcagatctaatctttaaaactggtgggaggagacgttga

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