Oxyura jamaicensis (ruddy duck): 118166437
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Entry
118166437 CDS
T11549
Symbol
PCDH19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K28837
protocadherin-19, delta 2
Organism
oja Oxyura jamaicensis (ruddy duck)
Pathway
oja04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
118166437 (PCDH19)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oja04515
]
118166437 (PCDH19)
Cell adhesion molecules [BR:
oja04515
]
Cadherins
Protocadherins
118166437 (PCDH19)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Ig_CLSTN
Ig_Cad99C_N
Cadherin_FAT4_N
PepSY
Ig_BT4661_3rd
Motif
Other DBs
NCBI-GeneID:
118166437
NCBI-ProteinID:
XP_035181246
LinkDB
All DBs
Position
4:complement(join(6419414..6419985,6443569..6443741,6446970..6447028,6467061..6467388,6470441..6472581))
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AA seq
1090 aa
AA seq
DB search
MGALPALLGAALLWAGAGALVNLKYSVEEEQRAGTVIANVAKDARDAGFVIDPRQPTAFR
VVSNSAPHLVDISPGSGLLVTKQKIDRDLLCRQSPKCVISLEVMSSSMEICVIKLEIKDL
NDNAPSFPTDQIELEISETASPGTRVPLESAYDPDSGSFGVQSYEITPNDLFGLETKTRG
DGSRFAELVVEKSLDRETQSHYSYVITALDGGDPPNFGTVELSIRVIDSNDNNPLFEEPA
YTVSVPENAPLGTPVIRLNASDPDEGTNGQVLYSFHSYVSERARELFQIDPQSGLITVSG
AIDYEEGHVYELDVQAKDLGPNSIPAHCKVTISVQDANDNPPLINLLSVNSELVEVSENA
PPGYVIALVRVSDRDSGANGRVQCKLLGNVPFRLQEYESFSTILVDGRLDREQRDQYNLT
IQAKDNGVPSLQATKSFTVKITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDL
GLNGSVSYQIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGNPS
LQSNATVRVIVLDVNDNTPVITAPPLVNGTAEVYIPRNAGVGYLVTVVKADDYDEGENGR
LSYEMVEGDRGFFEIDQVNGEIRTTRAFGENAKTAYELIVVAHDHGKTSLSASALILIYL
SPALDAQESIGSVNLSLIFIIALGSIAAILFVTMIFVAVKCKRDNKEIRTYNCRIAEYSY
GHQKKSSKKKKISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSE
STFLNVESQNNRNAGSNHIYHHTFAGQSPQQPDLIINGMPLPETENYSFDSNYVNSRAHL
IKSSSTFKDLEGNSLKDSGHEESDQTDSEHDVQRGLYCDTAVNDVLNTSVPSMASQGPEP
DQSEGFHCREECRILGHSDRCWMPRSAVPSRAKSPEHGRNIIALSIEATAVDAEPYADCS
AKRTFATFGKEGGELLAEERAGNPKGKRTVEPAAGSPKVSGAVREAGNGCEAASPVTSPL
HLKSPAAYSGLPCPAGRGPQPPANTGPARPAEAEPRGVDSEGGLQEGNLLLQDRREKDSP
VARRLRDIVL
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgggggctctcccggcgctgctgggggccgccttgctgtgggccggcgccggagccctc
gtcaacctcaagtactcggtggaggaggagcagagggccggcaccgtgatcgccaacgtc
gccaaggacgcccgggacgccggcttcgtgatagacccccggcagcccaccgccttccgg
gtggtctccaactcggccccccacctggtggacatcagccccgggtccgggctgctggtg
accaagcagaagattgaccgggacctgctgtgccggcagagccccaagtgcgtcatctcg
ctggaggtgatgtccagctccatggagatctgcgtgatcaagctggagatcaaggacctc
aacgacaatgcgcccagcttccccaccgaccagatcgagctggaaatctcagagactgcc
agccccggcacccgggtgccactggagagtgcctacgacccggactcgggcagctttggt
gtgcagagctacgagatcacccccaacgacctctttgggctggagaccaagacacgggga
gatgggtcccgctttgctgagctggtggtggagaagagcctggaccgcgagacccagtcc
cactacagctatgtgatcacggcgctggacggtggtgacccgcccaacttcggcacggtg
gagctcagcatccgtgtcattgactccaatgacaacaacccgctctttgaggagcctgcc
tacactgtcagtgtgcccgaaaacgccccgctgggtacgccagtcatccgcctcaatgcc
tctgacccggatgagggtaccaacggccaggtgctctactctttccacagctacgtctca
gagcgtgcccgggagctcttccagatcgacccccagagcggcctcatcacggtcagcggc
gccatcgactacgaggagggtcatgtctatgagctggatgtgcaggccaaggacttgggg
cctaactccatccctgcccattgcaaagtgaccatcagcgtgcaggatgccaatgacaac
ccgcccctcatcaacctgctctctgtcaacagtgagctggtggaggtgagcgagaacgcc
ccgccggggtacgtcattgccctcgtgcgggtctcggaccgtgactccggggccaacggg
cgggtgcagtgcaagctcctgggcaacgtgcctttccggctccaggagtacgagagcttc
tccaccatcctggtggatgggcggctggaccgggagcagagggaccaatacaacctcacc
atccaggccaaggacaatggagtaccctccctacaggccaccaagtccttcaccgtcaag
atcaccgatgagaatgacaaccatccccacttctccaagccctattaccaggtcatcgtg
caggagaacaacaccccaggggcctacctcctctcagtctctgcaagggaccctgacctg
ggcctcaacggcagtgtctcatatcagattgtaccctcccaagtcagggacatgcctgtc
ttcacctatgtctccatcaaccccaactctggagatatctatgctttgaggtccttcaat
cacgaacagacgaaggcctttgagtttaaggtcttggcaaaggatggaggtaatccctct
ctgcagagcaatgccaccgtcagggtgattgtcctggatgtcaatgacaacacgcccgtg
atcacggccccaccgctggtcaacgggactgcggaggtgtacatccccaggaacgcgggg
gtcggctacttggtgacagtggtcaaggcagatgactatgacgagggtgaaaatggcaga
ctttcctacgaaatggtggaaggagacagaggattttttgagatagaccaggtcaatgga
gagataaggaccaccagagcctttggggagaatgcaaagacagcctacgagctgattgtg
gtggctcatgaccatggaaaaacatctctgtcggcttctgccttgattttgatatacctg
tctccggccctcgatgcccaggagtccataggatctgttaacctctccctcattttcatt
attgccctggggtctattgctgccattctttttgtcaccatgatcttcgtggcagtaaag
tgcaaaagggataacaaggaaatcaggacctataactgcagaatcgcagagtactcctac
gggcatcagaagaaatcaagcaagaagaagaaaataagcaagaatgatatccgcctggta
ccgcgggatgtggaggagacggataaaatgaacgttgtgagctgctcctctctcacctca
tccctcaactacttcgactaccaccagcagaccctgccgctgggctgccgccgctccgag
agcaccttcctcaacgtggagagccagaacaacaggaacgctggttccaaccacatctac
catcacacattcgcggggcagagtccccagcagcccgacctcatcatcaacgggatgccg
ctacctgagactgagaactactcctttgactccaactacgtgaacagcagagctcattta
ataaagagcagctccacgttcaaggacttggaggggaacagcctgaaggacagtggccac
gaggagagtgaccagaccgacagcgagcacgatgtgcagcgcggcctctactgtgacacg
gctgtcaacgatgtgctcaacaccagcgtcccctccatggcgtcccagggccccgagcca
gatcagagcgaaggatttcattgcagggaagagtgccgcatcctgggccactcggaccgg
tgctggatgccccgcagcgccgtccccagccgtgccaagtcccccgagcacggcaggaac
atcattgccctctccatagaggcgacggcagtggacgcggagccttatgcagactgtagt
gccaaaaggaccttcgccaccttcggcaaggagggcggcgagctgctggccgaggagcgg
gctgggaaccccaaaggcaaaagaacggtggagccggctgccggcagccccaaggtgagc
ggcgccgtccgcgaggcgggcaacggctgcgaggccgccagccccgtcacctcgcccctg
cacctgaagagccccgcagcctacagcggcctgccctgccctgctggccgcgggccacag
cccccggcgaacactggccctgcccggcccgcggaggcagagcccaggggagtggacagc
gagggcggcctgcaggaaggcaacctgctgctgcaggaccgcagggagaaggactcgccg
gtggccaggagactgagggacatcgtcctctga
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