KEGG T11549: 118166619

Oxyura jamaicensis (ruddy duck): 118166619

Entry

118166619         CDS       T11549

Symbol

POLN

Name

(RefSeq) DNA polymerase nu

K16618

DNA polymerase nu [EC:2.7.7.7]

Organism

oja Oxyura jamaicensis (ruddy duck)

Pathway

oja03460

Fanconi anemia pathway

Brite

KEGG Orthology (KO) [BR:oja00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    118166619 (POLN)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oja03400]
    118166619 (POLN)
Enzymes [BR:oja01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     118166619 (POLN)
DNA repair and recombination proteins [BR:oja03400]
Eukaryotic type
  TLS (translesion DNA synthesis) factors
   A-family DNA polymerase
    118166619 (POLN)

SSDB

Motif

Pfam:

DNA_pol_A DNA_pol_P_Exo

Other DBs

NCBI-GeneID:

118166619

NCBI-ProteinID:

XP_035181551

LinkDB

Position

4:join(87593363..87593437,87600558..87601040,87601501..87601691,87604006..87604118,87604635..87604792,87610786..87610854,87612336..87612396,87612650..87612714,87613460..87613543,87613960..87614049,87616606..87616662,87617449..87617502,87617772..87617837,87635099..87635156,87636672..87636749,87637194..87637308,87658601..87658683,87661159..87661290,87664271..87664381,87667608..87667686,87678595..87678662,87687814..87687875,87690253..87690321)

AA seq 806 aa
MLLRGLCQLYSLFLQEFRLAEKITREINDSTIALLKSSASPARSIAGQKVRTVDTNEMFS
YQATTIPSFYWDLDLPKWEYGEKNLSVGAKNLKHGEKNVATPLKRKQDLPTCRLEKKRLA
VKNYASHESRYNWTSRRAEFSENYPCDIRSLGYEEKRELLANIEQAVAFVTTMLFQDGSS
QLNSEQVLTSSVKGIVILVKNQTDHLCSPSCSSSGCTRNAADESDKLIYLKTDWSPLWKQ
EEQAHKKFAWQVLFQMLCCKVPVICFNAKDFLRTVLQIYGNEISWKQVADSVVLDPRIAA
WLINPSDTVPSFECLTQKYFEKSFSMETENTDTGTLRNAWYQNLGVNLEKLYKVMADLTH
DLQVQGLWKLFCTLELPLIKILAVMETHKIHVNKQELKKTSEILGLRLKELEQEAHQIAG
ERFLLTSSSQLREVLFEKLKLHTLCEKIPRTERQQVASTSEVVLSKLQDLHPLPKIMLEY
RQVRKIKSTYVDGLRTCMRKGFISSTWNQTGTVTGRISSKHPNIQGISKHPVRIIKKQYI
KGKEEEIVTISPRALFVSKKGYTFLAADFSHIELRILADLSSEPELLKLFQEPETADIFT
TLASQWKGIPSEEVKQADREQAKRIVYSVVYGAGKERLAECLGITPLQASQFIESFMQKY
KKVNEFTKKTIEQCRKKGYVVSIMGRKRPLVNINAQDYKLRTQAERQAVNFVVQGSAADL
CKMAMVEIFTSVVTSPTLTARLIAQIHDELLFEVEDSQIREFSALVKRTMESLQQTTALE
VPLKVPLKVILTTGKSWGCMAELQEM

NT seq 2421 nt +upstreamnt +downstreamnt
atgctgctcagaggattatgtcagctttacagtctgttcctacaggaattcagactagca
gaaaaaataaccagagaaatcaatgattccacaattgcattattaaaatcatctgccagc
cctgcaagaagtattgctggtcagaaagtcaggacagtagataccaatgaaatgttttcc
tatcaagctaccacaataccgagcttttactgggatttagacttacctaaatgggaatac
ggagaaaaaaatctttcagtaggagcaaaaaacctgaagcatggtgaaaagaatgtagct
actccccttaaaagaaagcaagatctacctacatgtcgtttggagaaaaaaagattagct
gtaaagaactacgcttcacatgaaagcagatataactggacttccagacgagcagaattt
tctgaaaattatccttgtgatatcaggagtttgggatatgaagaaaaaagagaattgctt
gcaaatatagaacaagcagtggcttttgtaactaccatgctatttcaagatggttcttca
cagctcaactcagagcaggtcttaacttcatcagtaaaaggaatcgttatattagtgaag
aatcagacagatcacctttgttctcccagttgctcttcaagtggctgtactcggaatgct
gctgatgaaagtgacaaattaatttatttaaaaactgattggtcacctctttggaaacaa
gaagaacaggctcacaagaaatttgcttggcaagtgttgtttcaaatgctatgttgcaaa
gttccagttatttgcttcaatgcaaaagattttctgaggacagtacttcaaatttatggt
aatgaaattagctggaaacaagttgctgatagcgtcgtgttagatccaaggattgcagca
tggctgataaaccccagtgacacagttccctcttttgaatgtttgacgcagaagtatttt
gaaaaatctttttctatggaaacagaaaatacagatacaggcactttgagaaatgcatgg
taccaaaatttaggtgtaaacttggagaagctttataaagtaatggcagaccttactcat
gacttacaggttcaaggtttgtggaaattattttgcacattagaacttccactgatcaaa
attctggcagtgatggaaacacacaaaatacatgtgaacaaacaagaactgaaaaaaaca
tcagagattctggggctgagactcaaagagcttgaacaagaagcccatcagattgctgga
gaacgattccttttgaccagtagtagtcagcttagagaggtactatttgaaaagttaaaa
ctgcatacactgtgtgagaaaattccaagaactgaaaggcaacaagtggcatccacctcg
gaagtcgtgctgagtaagttgcaagatcttcatcctttgcctaagataatgttagaatac
cggcaggttcgtaagataaaatcgacctatgtggatggactacgaacatgtatgagaaag
ggatttatttcctctacatggaatcagacaggaactgtgactggcagaatttcatccaaa
catccaaacattcaaggtatttctaaacatccagtgagaattataaagaaacagtatata
aaaggaaaagaagaggaaatagtaaccatttccccaagagcattatttgtttcaaagaaa
ggatatacttttttagctgcagatttttcccatattgaattaaggatccttgctgactta
tcatctgaaccagagcttctgaaactgttccaagaacctgaaactgctgatatctttacc
acactggcttctcagtggaaggggattccaagtgaagaagtgaaacaagctgatagagag
caagcaaagcgtatagtttactcagtggtttatggagcaggtaaagaacgtcttgctgaa
tgcctgggaattactcctcttcaagccagtcaatttatagagagttttatgcaaaaatac
aagaaagttaatgaatttacaaagaaaaccattgaacagtgccgaaagaaaggttatgtg
gtttccattatggggcgtaaaagaccactggttaatatcaatgcacaggattataaacta
cgcactcaagcagagaggcaggctgtcaattttgttgttcaaggatctgcagctgacctt
tgtaaaatggctatggttgagatttttacctctgttgtcacttctccaactttaacagcc
aggttaattgctcagattcatgatgagttgttgtttgaagtagaagattctcaaatccgg
gaattttcagcattggtaaaaagaacaatggaatccctgcagcaaactacagccttggaa
gtaccactaaaggttcccttgaaagtgattcttaccactgggaaatcatgggggtgtatg
gcagaattgcaggagatgtaa

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