KEGG   Oxyura jamaicensis (ruddy duck): 118166825
Entry
118166825         CDS       T11549                                 
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03030  DNA replication
oja03410  Base excision repair
oja03420  Nucleotide excision repair
oja03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    118166825 (RFC1)
   03410 Base excision repair
    118166825 (RFC1)
   03420 Nucleotide excision repair
    118166825 (RFC1)
   03430 Mismatch repair
    118166825 (RFC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oja03032]
    118166825 (RFC1)
   03400 DNA repair and recombination proteins [BR:oja03400]
    118166825 (RFC1)
DNA replication proteins [BR:oja03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    118166825 (RFC1)
DNA repair and recombination proteins [BR:oja03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     118166825 (RFC1)
SSDB
Other DBs
NCBI-GeneID: 118166825
NCBI-ProteinID: XP_035181887
LinkDB
Position
4:join(72635024..72635086,72635855..72635980,72637708..72637783,72639871..72639990,72653074..72653306,72654050..72654124,72655781..72655858,72657328..72657412,72657503..72657696,72658767..72658874,72659426..72659605,72660180..72660284,72661455..72661848,72662764..72662873,72664351..72664465,72664850..72664938,72665827..72665964,72666403..72666498,72666670..72666768,72667223..72667377,72667495..72667612,72668560..72668705,72669239..72669452,72670003..72670194,72670396..72670491)
AA seq 1134 aa
MPESLSFFTMAATPRGSGTTEDIRKFFGVVPPGKRQECENVRSDKIKNGEGDSSGKKRGK
ETKVKNSPSEDAPKQKQTNKKKRIIYDSDSEEEVQSVKKSKKPSEKKAATPKLGKVLKQH
PVVYVSETDDDDDFVNKRISLKPKENGASAISCPGTTTVKKEDVKPRAKPKPLSPVKLTP
TSALDFFGTSSVQRSEKKLVASKRKEPSQSRDSTVDDEAIARQLQLEEDSELERQLHEDE
EFAKTLAMLDETPQKKKARRDSEEQVVLSIKSSPNVTDRYKQSQRVKEAEQSTDKTLPLK
PTSKLAALKRKEEIAEKERGTRSSVSKEKLQGKEEKKTPKKEKISPKKAESVSPEDSEKK
RNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLESIERDEAKSLIERYGG
KVTGNVSKKTNYLVMGRDCGQSKCEKASALGTKIIDEDGLFDLVRTMPGKKSKYELAAES
EAKKTELRQKKTPQKTEAGKKNFSPLNREADIKKRNSTPEKGATFKSAKKETAAIRKLTD
FKQQTAEKKEVPEPKGNLVSQIENGIERLLWVDKYKPTSLKAIIGQQGEQSCANKLLRWL
RNWRKNTSEDGQAKANKLGGKDDGISSKAALLSGPPGVGKTTTAALVCKELGYSYVELNA
SDTRSKNSLKEVVAESLNNTSIKDFCSGTSSSVSGKHVLIMDEVDGMAGNEDRGGIQELI
GLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRLEQIKGAMMSIAYKEGLKIPPP
AMHEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDVVRKVFAA
GEEASRMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGDLKKHLMLLSRAADSICDG
DLVDKQIRSKQNWNLLPTQAIYSSVLPGELMRGYMSQFPVFPSWLGKFSSTGKHERIVQE
LAMHMSLRTQMCKRTVNMEYLSYLRDALVQPLKDFGADGVQQAIAFMDSYCLMKEDIENI
MEISMWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLNSVKTSKRQSGSLATSELSED
LNVDEIQSDEDEQDSVESDAMIKQKKAKSSKLPKREKNEEPTKKEGKRKEKTRH
NT seq 3405 nt   +upstreamnt  +downstreamnt
atgccagaaagtttgtctttctttacaatggcagctacccctagaggcagtggtactacg
gaggatatccggaaattctttggtgttgtacccccagggaagcgacaagaatgtgagaat
gtgaggagtgacaaaataaaaaatggggaaggagactcaagtggaaaaaagaggggaaaa
gagactaaggtgaaaaattcacccagtgaagatgctcccaaacaaaagcagacaaacaag
aaaaaaagaataatctatgattcagattcagaagaggaggtgcagtcagtgaaaaagtcc
aagaagccatcagagaaaaaagcagccactccaaaacttggtaaagttctaaagcagcat
cctgttgtttatgtttcagagacagatgatgatgatgactttgtcaataagagaatttcc
ctgaaaccaaaggagaatggggcatcagcaatcagttgtccaggaacaacaacagtgaaa
aaggaagatgtaaaaccacgagctaaacccaaaccattatctccagtgaagctgactccc
acctcagctcttgatttctttgggacaagtagtgtccagcgatccgaaaagaaactggta
gcaagtaaaaggaaggaaccctcacaaagcagggacagcacagtggacgatgaagccatt
gctaggcaactgcagcttgaagaagattcagagctggagagacagttgcatgaagatgaa
gaatttgctaagactttggccatgttggatgaaacaccacagaagaaaaaggctcggagg
gattcggaagagcaggtagtactgagcatcaagagcagtcctaacgtgacagacagatac
aagcaatctcaaagagtgaaagaagcagaacagtcgactgataagaccttgccattgaaa
cccacctctaagcttgcggctctgaaacgaaaagaagagattgctgaaaaggaaagaggc
actcgaagttcagtatcaaaagaaaaacttcagggaaaagaagagaagaaaacaccaaag
aaagagaaaatttctcccaagaaggctgagtctgtaagtcctgaggactctgaaaagaag
cgtaacaattatcaagcctaccgaagcttccttaatcgtgagggtccaaaagctctgggt
tccaaagagatacctcaaggagctgaaaactgcttggaaggcctgacattcgtaattaca
ggagttctggagtctattgaaagagatgaggccaaatctctgattgaacgttacggagga
aaagtaactgggaatgtcagcaagaagacgaactacttggttatgggacgagattgtggc
caatctaaatgtgaaaaggcatcggctttagggacaaaaattattgatgaggatggccta
tttgatcttgttcgaactatgccaggcaaaaagtccaaatatgagttggcagctgaatca
gaggcaaagaaaacagagttgagacagaaaaagacaccacagaaaactgaagctggaaaa
aagaattttagccccctcaacagggaagctgatattaaaaaaagaaattctactcctgag
aagggagctaccttcaaatctgctaagaaagaaactgctgccattcgaaagcttacagac
tttaaacagcaaacagcggagaagaaagaagtcccagaaccgaaggggaacttggtctct
cagattgaaaatggaatagagagattgctgtgggtggataaatacaagcctacatctctc
aaggcaatcattggacagcagggtgagcaaagctgtgccaataaacttctgcgatggctc
cgaaactggcgcaagaatacctcagaagatggacaagcaaaggccaacaagcttggaggc
aaagatgatggtattagttctaaagcagcattactttccggtccacctggagttggtaaa
actactacagctgctttagtttgtaaggaactggggtatagctatgtggagctgaacgcc
agtgacactcgaagtaagaacagtctaaaggaagtagttgctgaatcgcttaacaacacc
agcatcaaagacttctgttctggcacatcctcatcagttagtgggaaacatgtattgatc
atggatgaagtggatggtatggcaggcaatgaagacagaggagggattcaggagttgatc
ggtttgattaaacacacaaaaatacccatcatctgcatgtgtaatgatcgaaaccatcct
aaaattcgttccttggtccactactgttttgatcttcgttttcagagacctcgtctagag
cagattaagggtgccatgatgtctattgcgtataaagaaggcttaaaaattccaccacct
gctatgcatgagataatcctggcagccaatcaagacatcagacaggttttgcataatctt
aatatgtggtgtgcaaaagataaatcattgacttatgatgaggccaaaacagatgccagc
agagctaaaaaggatatcaaactgggcccttttgacgttgtccggaaggtttttgctgct
ggagaggaagcttctcgtatgtctcttatagacaaatccgaccttttcttccatgactat
tccctagcacctctttttgtccaagagaactatgtacatgtgaaaccggcagctgctgga
ggagatctgaaaaagcacttgatgctcttgagtagagcagctgatagtatatgtgatggt
gacctagtggacaaacagattcgtagcaagcaaaactggaaccttctaccaacacaggct
atttattcgagtgttctccctggggagctgatgagaggttacatgtcccagtttcctgtc
tttcccagctggctggggaaattttcatcaacaggcaaacacgaacgtattgtccaagaa
ctggcaatgcacatgagtctcagaacgcagatgtgcaagaggacagtaaacatggagtat
ttgtcttatctgcgggatgcacttgtccaacctttgaaagactttggagcagatggtgta
caacaagctatagctttcatggactcttactgcctgatgaaagaagacattgaaaatatc
atggaaatcagcatgtggggaggcaaacccagtcctttttcaaagctggatcccaaggtc
aaagctgcctttacacgtgcctacaacaaagaggcacatctgactccgtattcccttaat
tctgtgaagacatctaaaaggcagtcaggatctttggcaacctctgaactgagtgaagac
ctgaatgtggatgagatccagtctgatgaggatgagcaagacagtgttgaaagcgatgcg
atgattaagcaaaaaaaggcgaagtcttccaagctgccaaaaagagagaaaaatgaagaa
ccaacaaaaaaagaagggaaaaggaaggagaaaacaagacattaa

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