KEGG   Oxyura jamaicensis (ruddy duck): 118167101
Entry
118167101         CDS       T11549                                 
Symbol
NFKB1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
  KO
K02580  nuclear factor NF-kappa-B p105 subunit
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja04010  MAPK signaling pathway
oja04210  Apoptosis
oja04218  Cellular senescence
oja04519  Cadherin signaling
oja04620  Toll-like receptor signaling pathway
oja04621  NOD-like receptor signaling pathway
oja04622  RIG-I-like receptor signaling pathway
oja04623  Cytosolic DNA-sensing pathway
oja04625  C-type lectin receptor signaling pathway
oja04920  Adipocytokine signaling pathway
oja05132  Salmonella infection
oja05164  Influenza A
oja05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:oja00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    118167101 (NFKB1)
  09133 Signaling molecules and interaction
   04519 Cadherin signaling
    118167101 (NFKB1)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    118167101 (NFKB1)
   04218 Cellular senescence
    118167101 (NFKB1)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    118167101 (NFKB1)
   04621 NOD-like receptor signaling pathway
    118167101 (NFKB1)
   04622 RIG-I-like receptor signaling pathway
    118167101 (NFKB1)
   04623 Cytosolic DNA-sensing pathway
    118167101 (NFKB1)
   04625 C-type lectin receptor signaling pathway
    118167101 (NFKB1)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    118167101 (NFKB1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    118167101 (NFKB1)
   05168 Herpes simplex virus 1 infection
    118167101 (NFKB1)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    118167101 (NFKB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:oja03000]
    118167101 (NFKB1)
Transcription factors [BR:oja03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   RHR (Rel homology region) Rel/Ankyrin
    118167101 (NFKB1)
SSDB
Motif
Pfam: RHD_DNA_bind Ank_2 RHD_dimer Ank Ank_4 Ank_3 Ank_5 Death CSTF2_hinge
Other DBs
NCBI-GeneID: 118167101
NCBI-ProteinID: XP_035182228
LinkDB
Position
4:complement(join(46689381..46689568,46690298..46690475,46690614..46690786,46691128..46691197,46691557..46691675,46692527..46692629,46693496..46693665,46694794..46694995,46697085..46697199,46700029..46700170,46702520..46702714,46703628..46703723,46704492..46704614,46706969..46707107,46707690..46707781,46709661..46709765,46711655..46711813,46713068..46713231,46714698..46714846,46721771..46721869,46724312..46724352,46732927..46733011,46734112..46734164,46745185..46745287))
AA seq 1020 aa
MLLSGSATECFQEVAVEISRNLSAEIHARPASISGLKMAGEDPYIMGVSDPQMFAMDQFM
GMNTIFNNTGYITSDLPLRTADGPYLQIIEQPKQRGFRFRYVCEGPSHGGLPGASSEKNK
KSFPQVKICNYVGPAKVIVQLVTNGKYVHLHAHSLVGKFCEDGVCTVNAGPKDMVVGFAN
LGILHVTKKKVFETLETRMIDACKKGYNPGLLVHPELGYLQAEGRGDRQLTEREREIIRQ
AAVQQTKEMDLSVVRLMFTAFLPDSNGSFTRRLDPVISDAIYDSKAPNASNLKIVRMDRT
AGCVTGGEEIYLLCDKVQKDDIQIRFYEEDENGGMWEGFGDFSPTDVHRQFAIVFKTPKY
RDVNITKPASVFVQLRRKSDLETSEPKPFLYYPEIKDKEEVQRKRQKLMPNFSDGYGGGS
GTGGGGMYGGGGGGAGSGFSYPSYGYSAFGGMHFHPGTTKSNAGMKHGNGLSNCTAEKDR
KRSDKPSDKCSMEHDVKVETMERNECRTCGVNEEKEEDASSCRGEVNEADCKWQDGPFLE
KAMQLAKRHCNALFDYAITGDVKMLLAVQRHLTIVQDDNGDNVLHLAIIHLHKELVKNLL
DVIPDLNYNDIINMRNDLYQTPLHLAVITKQAEVVEDLLKAGADVSLLDRHGNSALHLAA
AEGDDRILSLLLKHKKIPSMVDLFNGEGLCAIHMVVMANSMSCLKQLIAAGVNVNAQEQK
SGRTALHLAVELENIPLAGYLLLETDVDVNSTTYDGTTPLHIAAGRGSTKLAAVLKAAGA
DPHIENFEPLFDLEDMKDDDDEGIVPGTTPLDMAANCEVYDILNDKPYKPEAAVSKDLLT
QGHIRELNESVKMQLCKVLEICDPSKNWFTLAQKLGLGILCNAFRLCPSPSRTLLDNYEV
SGGTIEELSAALRQMNHTEAIEIIQNAQSISQRQPHQEDNTVEALLSSSPPTFAKRDTGE
VYNSKFQDNESTCDSGVETSFRKLSFTYSDSLNSKSSITLSKINLGYGHESSVQSHYIAN
NT seq 3063 nt   +upstreamnt  +downstreamnt
atgctgctgtcaggatctgccaccgagtgttttcaagaggttgctgtagagatttcaagg
aatctcagtgctgagatacatgccagacctgctagtatttcaggacttaaaatggcagga
gaagatccctatattatgggagtgtcagatccccaaatgtttgcaatggaccagttcatg
ggaatgaatacaatatttaataatacaggttacatcacttcagacttaccactacgaaca
gcagacggaccgtatcttcaaatcattgagcagccaaaacagaggggttttcgattccga
tacgtatgtgaagggccttcacatggtggacttcctggtgcttccagtgaaaagaacaaa
aaatcattccctcaagtcaaaatttgcaattatgttggacctgcaaaagtaattgtccag
ttagttactaacgggaaatacgtccacttgcatgctcacagcttggtgggtaaattttgt
gaagatggagtatgcacagttaacgcaggacctaaagatatggttgtagggtttgcaaac
cttggaatacttcatgtcacaaagaagaaggtgtttgaaactctggaaacacgtatgata
gatgcttgcaaaaaaggatacaacccaggactcttggtgcatcctgaacttggctatctg
caggcagaaggacgtggagacagacagctaactgaacgagaaagagaaattattcgtcag
gcagcagtgcagcagactaaagaaatggatctcagtgtggtgcgtcttatgtttacagcc
tttctccctgacagcaatggcagtttcacgcgaagacttgatcctgttatatcagatgca
atatatgacagcaaagctcccaatgcctccaacttaaaaattgtaagaatggacagaaca
gcagggtgtgtaactggaggggaagagatttaccttctctgtgacaaggttcagaaagat
gatattcaaatacgtttctatgaggaggatgagaatggtggtatgtgggaaggctttgga
gacttttctcctacagatgtacataggcagtttgctattgtgtttaaaacacccaagtat
cgagacgtcaatatcacaaagccagcctctgtatttgtacaactgcgtcggaaatctgat
ctggaaacaagtgaaccaaagccttttctttactatccggaaatcaaagataaagaagaa
gtgcaaagaaaacgacagaagctcatgccaaacttctcagatggctacggtggaggcagc
ggcacaggaggaggtggcatgtatggtgggggaggcggcggtgctggctctgggttcagt
tatccttcgtacggttactcagcttttggagggatgcatttccaccctggcacaacaaag
tccaatgctggaatgaaacatggcaacggactgtcaaattgcacagctgaaaaagatagg
aagaggtctgataaaccaagtgacaaatgcagcatggaacatgatgtgaaagtggaaact
atggagaggaatgagtgcagaacctgtggtgttaatgaggagaaggaggaggatgcttca
tcctgtagaggtgaagtaaacgaagcagattgcaagtggcaggatggtcccttcctggag
aaggcgatgcagcttgccaagcgccattgcaatgctctctttgattacgctataactgga
gatgtgaagatgctgttggctgttcagcgccatctcaccattgtccaggatgataacgga
gacaatgtccttcatttagcaattatccaccttcacaaggaactggttaaaaacctcttg
gatgtgatcccagatttgaattataacgacattatcaacatgaggaatgacctttatcag
acccccttgcacctggcagtaatcacaaagcaggcagaggtggtggaagacttgctgaag
gctggagcagatgtcagccttctggatcgccacggtaattctgccctacatttagctgct
gctgaaggagatgacaggattttgagtctgctcctcaagcataagaagataccttcgatg
gtcgaccttttcaatggtgaaggtctctgtgcaattcacatggtggtgatggcaaacagc
atgtcctgcctcaaacaactgatcgctgctggagttaatgtcaacgctcaggaacaaaaa
tctggacgaactgcattgcatttagctgttgaactggagaacatccctttggcgggctac
ctgttgcttgagactgatgtagacgtgaacagcactacatatgatgggacaacacctctt
cacatagcagctggaaggggctctacaaaattggcagcagttctcaaagcagcaggtgca
gatcctcacattgagaactttgagccactgtttgatctagaggatatgaaagatgatgat
gatgaaggaatagtacctgggacaacaccactggatatggcagccaattgtgaggtgtac
gacatattaaatgacaagccttacaaaccagaagcagcagtttcaaaggacttactgaca
caaggacatataagagagctgaatgaaagcgtcaagatgcagctttgcaaagtattggaa
atatgtgacccaagcaaaaactggtttactctagcacaaaagctgggtcttggcatactt
tgtaacgccttcaggttgtgcccttccccatcaaggactctgctagataactatgaggtt
tctggtggtacaattgaagagctgagtgctgctttgagacagatgaatcacacggaagcc
attgaaatcattcagaatgcacaatccatctcacaaaggcagcctcaccaggaggacaac
acagtagaagctcttctttcatcatctccacccacctttgcaaagagagacacaggtgaa
gtttacaatagcaaatttcaagacaacgaaagcacatgcgacagtggtgtggagacctcc
ttccgcaaactgagctttacttactcagactctctgaacagcaagtcatcaataacactc
agcaaaatcaaccttggctatggacatgaaagctcagtgcaaagccattatatagctaac
tag

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