KEGG   Oxyura jamaicensis (ruddy duck): 118167249
Entry
118167249         CDS       T11549                                 
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like
  KO
K14405  pre-mRNA 3'-end-processing factor FIP1
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    118167249
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oja03019]
    118167249
Messenger RNA biogenesis [BR:oja03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     118167249
SSDB
Other DBs
NCBI-GeneID: 118167249
NCBI-ProteinID: XP_035182427
LinkDB
Position
4:join(16167322..16167415,16167849..16167888,16170841..16170925,16172208..16172314,16173622..16173680,16174750..16174860,16177272..16177402,16178205..16178329,16179278..16179383,16180781..16180979,16182671..16182697,16185224..16185281,16185849..16185904,16187240..16187438,16189397..16189555,16192092..16192224)
AA seq 562 aa
MATELEPPAAGAVQGAAPLEAEEDEEHWLYGDDTTGKQEDGPISGHAESSHPLQDAPQEN
RPVSNEDREMSQHALPSGEDDEEDSDSDSDDDDVKVTIGNIKTGAPSYMGTPMNLNLKTG
RGYGASASAKLQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYFNYGFNEE
TWKAYCEKQRRLQLGLDPAPPISTENKITVQQGRTGNAEKEVENNIIKTEFKTDFLALVG
GRMKAGPPPNRKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGSKPQPPQQ
PQQPSQPQQPPQQQPFAPPAGPPPPPLAGPPPPHFLHPPPPVTSVPPPLHPPGLPPPGPI
PGLFPPPLAPPPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSHTPWVTTV
DKGTSSSSSSHWEYSGSRRERERERERERERERDRDRTPTTSEYNNDDERYRYYSRERSY
DFERDYRRSRDRSREREDRHRERRHRDKEESSKHKSSRRKQHESEEGESHRRHKHKKNKR
SKEEKEASEDGAQEGEEQDAKE
NT seq 1689 nt   +upstreamnt  +downstreamnt
atggccaccgagctggagccgccggcggccggcgcggtgcagggcgcggcgccgctggag
gcggaggaggacgaggagcactggctgtacggggacgacaccactggcaagcaagaagat
ggaccaatctctggacacgcagaatcttctcatcctttgcaagatgctcctcaggagaat
cggcctgtcagcaatgaagaccgagagatgtcacaacatgcccttccaagtggtgaagat
gatgaagaagacagtgatagcgacagcgatgatgatgacgtgaaggttactattggcaat
attaaaacgggagcaccatcatacatgggaactcctatgaatctaaacttaaaaacgggt
agaggctatggagcatcagcttcagccaagttgcagcccaaaggtattgatttagatgcc
gcagggaatataaatggattgcctgttatagaagtggatttagattcatttgaagacaaa
ccatggaggaaaccaggtgctgatctctctgattactttaattacggattcaatgaagaa
acatggaaagcttattgtgagaagcagcgacggcttcagcttgggctggatcctgctcct
cccatcagcactgaaaataagatcacggtccagcaaggaagaacaggaaatgctgaaaaa
gaagtggaaaacaatatcatcaaaacagaattcaaaacagacttcttggctctggtggga
ggacgcatgaaagctgggcctcctcctaataggaagctgggtgggacaattgatgtgatc
ggtggccaggcaggcacaattaggagagtagaaggaagacgtcgtgataagcatgcctct
gaggaaaacccaattcaggttctaggagatcacggaagtaagccacagcccccacagcaa
ccccagcaaccatcgcagccccagcagccccctcagcaacagccatttgcaccaccagca
ggcccaccgccgcccccactcgccgggccacctccaccacacttcctccaccctcctccg
ccggttacttctgttccacctccactgcatcctccaggtctgccgccacccggtcctatt
ccagggctgttcccgcctcctctggcgccgccaccagctctcctcattccgacgctggat
ggccagccagccagctacaataacaggcagcctcctccatttggctacaactctgcagat
tcaggtttcatcagctacccgcccatctccacgtcccacacaccctgggtgacgacggtg
gacaaaggcacaagcagctccagcagcagccactgggagtactcgggctcgaggcgcgag
agagagagggaacgcgagcgggagagggaacgggagagagacagagaccgcacgccgacc
actagtgaatacaacaatgatgacgaacgataccgctactacagccgagagcgcagctat
gacttcgagcgcgactaccgccggagtcgagatcgcagccgggagcgggaggatcggcac
cgggagcgcaggcacagggacaaagaggagagcagcaagcataagtcttcgaggcgcaag
cagcatgagagcgaggagggggagagccaccggcgtcacaagcacaaaaagaacaagcgt
agcaaggaggagaaggaggccagtgaagacggtgcccaggaaggagaggagcaggatgcc
aaggagtaa

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